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Weber, J; Bao, H; Hartlmüller, C; Wang, Z; Windhager, A; Janowski, R; Madl, T; Jin, P; Niessing, D.
Structural basis of nucleic-acid recognition and double-strand unwinding by the essential neuronal protein Pur-alpha.
Elife. 2016; 5(7):
Doi: 10.7554/eLife.11297
[OPEN ACCESS]
Web of Science
PubMed
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- Co-authors Med Uni Graz
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Madl Tobias
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- Abstract:
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The neuronal DNA-/RNA-binding protein Pur-alpha is a transcription regulator and core factor for mRNA localization. Pur-alpha-deficient mice die after birth with pleiotropic neuronal defects. Here, we report the crystal structure of the DNA-/RNA-binding domain of Pur-alpha in complex with ssDNA. It reveals base-specific recognition and offers a molecular explanation for the effect of point mutations in the 5q31.3 microdeletion syndrome. Consistent with the crystal structure, biochemical and NMR data indicate that Pur-alpha binds DNA and RNA in the same way, suggesting binding modes for tri- and hexanucleotide-repeat RNAs in two neurodegenerative RNAopathies. Additionally, structure-based in vitro experiments resolved the molecular mechanism of Pur-alpha's unwindase activity. Complementing in vivo analyses in Drosophila demonstrated the importance of a highly conserved phenylalanine for Pur-alpha's unwinding and neuroprotective function. By uncovering the molecular mechanisms of nucleic-acid binding, this study contributes to understanding the cellular role of Pur-alpha and its implications in neurodegenerative diseases.
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Animals -
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Crystallography, X-Ray -
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DNA, Single-Stranded - chemistry
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DNA, Single-Stranded - metabolism
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Drosophila -
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Drosophila Proteins - chemistry
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Drosophila Proteins - metabolism
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Gene Deletion -
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Genetic Complementation Test -
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Models, Molecular -
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Nucleic Acid Conformation -
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Protein Binding -
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Protein Conformation -
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Transcription Factors - chemistry
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Transcription Factors - metabolism