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Schimek Michael |

Publications

** = Publications listed in SCI/SSCI/Pubmed

2024

Full paper/article (Journal)

** Schimek, MG; Vitale, L; Pfeifer, B; La Rocca, M Effective signal reconstruction from multiple ranked lists via convex optimization
DATA MIN KNOWL DISC. 2024; Doi: 10.1007/s10618-023-00991-z
Web of Science FullText FullText_MUG

Correction

** Schimek, MG; Vitale, L; Pfeifer, B; La Rocca, M Effective signal reconstruction from multiple ranked lists via convex optimization (JAN, 10.1007/s10618-023-00991-z, 2024)
DATA MIN KNOWL DISC. 2024; Doi: 10.1007/s10618-024-01009-y
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2023

Full paper/article (Journal)

** Pfeifer, B; Bloice, MD; Schimek, MG Parea: Multi-view ensemble clustering for cancer subtype discovery.
J Biomed Inform. 2023; 143:104406 Doi: 10.1016/j.jbi.2023.104406
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2022

Short report/Letter

** Pfeifer, B; Holzinger, A; Schimek, MG Robust Random Forest-Based All-Relevant Feature Ranks for Trustworthy AI.
Stud Health Technol Inform. 2022; 294: 137-138. Doi: 10.3233/SHTI220418
PubMed FullText FullText_MUG

2021

Full paper/article (Journal)

** Pfeifer, B; Schimek, MG A hierarchical clustering and data fusion approach for disease subtype discovery.
J Biomed Inform. 2021; 113:103636 Doi: 10.1016/j.jbi.2020.103636 [OPEN ACCESS]
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2020

Full paper/article (Journal)

** Pfeifer, B; Alachiotis, N; Pavlidis, P; Schimek, MG Genome scans for selection and introgression based on k-nearest neighbour techniques.
Mol Ecol Resour. 2020; 20(6):1597-1609 Doi: 10.1111/1755-0998.13221 [OPEN ACCESS]
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Editorial

** Frommlet, F; Schimek, MG Comments on: Hierarchical inference for genome-wide association studies: a view onmethodology with software by F. Frommlet and M. G. Schimek.
COMPUTATION STAT. 2020; 35(1): 41-43. Doi: 10.1007/s00180-019-00945-4
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Correction

** Golob-Schwarzl, N; Bettermann, K; Mehta, AK; Kessler, SM; Unterluggauer, J; Krassnig, S; Kojima, K; Chen, X; Hoshida, Y; Bardeesy, NM; Müller, H; Svendova, V; Schimek, MG; Diwoky, C; Lipfert, A; Mahajan, V; Stumptner, C; Thüringer, A; Fröhlich, LF; Stojakovic, T; Nilsson, KPR; Kolbe, T; Rülicke, T; Magin, TM; Strnad, P; Kiemer, AK; Moriggl, R; Haybaeck, J Corrigendum to High Keratin 8/18 Ratio Predicts Aggressive Hepatocellular Cancer Phenotype12 [Translational Oncology Volume 12, Issue 2, February 2019, Pages 256-268].
Transl Oncol. 2020; 13(2):490-492 Doi: 10.1016/j.tranon.2019.08.001 [OPEN ACCESS]
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** Ulz, P; Perakis, S; Zhou, Q; Moser, T; Belic, J; Lazzeri, I; Wölfler, A; Zebisch, A; Gerger, A; Pristauz, G; Petru, E; White, B; Roberts, CES; John, JS; Schimek, MG; Geigl, JB; Bauernhofer, T; Sill, H; Bock, C; Heitzer, E; Speicher, MR Publisher Correction: Inference of transcription factor binding from cell-free DNA enables tumor subtype prediction and early detection.
Nat Commun. 2020; 11(1): 1965-1965. Doi: 10.1038/s41467-020-15799-4 [OPEN ACCESS]
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2019

Full paper/article (Journal)

** Golob-Schwarzl, N; Bettermann, K; Mehta, AK; Kessler, SM; Unterluggauer, J; Krassnig, S; Kojima, K; Chen, X; Hoshida, Y; Bardeesy, NM; Müller, H; Svendova, V; Schimek, MG; Diwoky, C; Lipfert, A; Mahajan, V; Stumptner, C; Thüringer, A; Fröhlich, LF; Stojakovic, T; Nilsson, KPR; Kolbe, T; Rülicke, T; Magin, TM; Strnad, P; Kiemer, AK; Moriggl, R; Haybaeck, J High Keratin 8/18 Ratio Predicts Aggressive Hepatocellular Cancer Phenotype.
Transl Oncol. 2019; 12(2):256-268 Doi: 10.1016/j.tranon.2018.10.010 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

** Ulz, P; Perakis, S; Zhou, Q; Moser, T; Belic, J; Lazzeri, I; Wölfler, A; Zebisch, A; Gerger, A; Pristauz, G; Petru, E; White, B; Roberts, CES; John, JS; Schimek, MG; Geigl, JB; Bauernhofer, T; Sill, H; Bock, C; Heitzer, E; Speicher, MR Inference of transcription factor binding from cell-free DNA enables tumor subtype prediction and early detection.
Nat Commun. 2019; 10(1): 4666-4666. Doi: 10.1038/s41467-019-12714-4 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

2018

Full paper/article (Journal)

** Cvitic, S; Novakovic, B; Gordon, L; Ulz, CM; Mühlberger, M; Diaz-Perez, FI; Joo, JE; Svendova, V; Schimek, MG; Trajanoski, S; Saffery, R; Desoye, G; Hiden, U Human fetoplacental arterial and venous endothelial cells are differentially programmed by gestational diabetes mellitus, resulting in cell-specific barrier function changes.
Diabetologia. 2018; 61(11): 2398-2411. Doi: 10.1007/s00125-018-4699-7 [OPEN ACCESS]
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2017

Full paper/article (Journal)

** Lal, R; Lind, K; Heitzer, E; Ulz, P; Aubell, K; Kashofer, K; Middeke, JM; Thiede, C; Schulz, E; Rosenberger, A; Hofer, S; Feilhauer, B; Rinner, B; Svendova, V; Schimek, MG; Rücker, FG; Hoefler, G; Döhner, K; Zebisch, A; Wölfler, A; Sill, H Somatic TP53 mutations characterize preleukemic stem cells in acute myeloid leukemia.
Blood. 2017; 129(18): 2587-2591. Doi: 10.1182/blood-2016-11-751008 [OPEN ACCESS]
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** Svendova, V; Schimek, MG A novel method for estimating the common signals for consensus across multiple ranked lists
COMPUTATIONAL STATISTICS AND DATA ANALYSIS. 2017; 115: 122-135. Doi: 10.1016/j.csda.2017.05.010 [OPEN ACCESS]
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2016

Full paper/article (Journal)

** Bettermann, K; Mehta, AK; Hofer, EM; Wohlrab, C; Golob-Schwarzl, N; Svendova, V; Schimek, MG; Stumptner, C; Thüringer, A; Speicher, MR; Lackner, C; Zatloukal, K; Denk, H; Haybaeck, J Keratin 18-deficiency results in steatohepatitis and liver tumors in old mice: A model of steatohepatitis-associated liver carcinogenesis.
Oncotarget. 2016; 7(45):73309-73322 Doi: 10.18632/oncotarget.12325 [OPEN ACCESS]
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** Narath, SH; Mautner, SI; Svehlikova, E; Schultes, B; Pieber, TR; Sinner, FM; Gander, E; Libiseller, G; Schimek, MG; Sourij, H; Magnes, C An Untargeted Metabolomics Approach to Characterize Short-Term and Long-Term Metabolic Changes after Bariatric Surgery.
PLoS One. 2016; 11(9):e0161425-e0161425 Doi: 10.1371/journal.pone.0161425 [OPEN ACCESS]
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2015

Full paper/article (Journal)

** Schimek, MG; Budinská, E; Kugler, KG; Švendová, V; Ding, J; Lin, S TopKLists: a comprehensive R package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists.
Stat Appl Genet Mol Biol. 2015; 14(3):311-316 Doi: 10.1515/sagmb-2014-0093 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

2013

Abstract (Journal)

** Bettermann, K; Mehta, AK; Lederer, E; Ernst, C; Kessler, SM; Chen, X; Hoshida, Y; Bardeesy, N; Fuchs, BC; Tanabe, KK; Müller, H; Svendova, V; Schimek, MG; Mach, M; Speicher, MR; Mahajan, V; Stumptner, C; Thueringer, A; Stojakovic, T; Longerich, T; Schirmacher, P; Magin, TM; Strnad, P; Fuchs, CD; Trauner, M; Spilka, R; Kiemer, AK; Teufel, A; Maass, T; Moriggl, R; Campbell, JS; Thorgeirsson, SS; Stauffer, J; Karin, M; Llovet, JM; Zatloukal, K; Lackner, C; Haybäck, J Steatohepatitis-associated Hepatocellular Carcinoma: Evidence of a Keratinopathy.
HEPATOLOGY. 2013; 58(S1):543A-543A.-64th Annual Meeting of the American Association for the Study of Liver Diseases (AASLD); NOV 1-5, 2013; Washington, DC, USA. [Poster]
Web of Science

2012

Full paper/article (Journal)

** Hall, P; Schimek, MG; Moderate-Deviation-Based Inference for Random Degeneration in Paired Rank Lists.
J AMER STATIST ASSN. 2012; 107(498): 661-672. Doi: 10.1080/01621459.2012.682539
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** Schimek, MG; Mysickova, A; Budinska, E; An Inference and Integration Approach for the Consolidation of Ranked Lists.
COMMUN STATIST-SIMULAT COMPUT. 2012; 41(7): 1152-1166. Doi: 10.1080/03610918.2012.625843
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2011

Full paper/article (Journal)

** Blaschitz, A; Gauster, M; Fuchs, D; Lang, I; Maschke, P; Ulrich, D; Karpf, E; Takikawa, O; Schimek, MG; Dohr, G; Sedlmayr, P Vascular endothelial expression of indoleamine 2,3-dioxygenase 1 forms a positive gradient towards the feto-maternal interface.
PLoS One. 2011; 6(7):e21774 Doi: 10.1371/journal.pone.0021774 [OPEN ACCESS]
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** Nikitina, L; Ahammer, H; Blaschitz, A; Gismondi, A; Glasner, A; Schimek, MG; Dohr, G; Sedlmayr, P A New Method for Morphometric Analysis of Tissue Distribution of Mobile Cells in Relation to Immobile Tissue Structures
PLOS ONE. 2011; 6(3): e15086 Doi: 10.1371/journal.pone.0015086 [OPEN ACCESS]
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Abstract (Journal)

** Sedlmayr, P; Gauster, M; Fuchs, D; Lang, I; Maschke, P; Ulrich, D; Karpf, E; Takikawa, O; Schimek, MG; Dohr, G; Blaschitz, A Expression of indoleamine 2,3-dioxygenase 1 in the vascular endothelium at both sides of the feto-maternal interface
J REPROD IMMUNOL. 2011; 90(2): 164-164. Doi: 10.1016/j.jri.2011.06.060 [Poster]
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2009

Full paper/article (Journal)

** Budinska, E; Gelnarova, E; Schimek, MG MSMAD: a computationally efficient method for the analysis of noisy array CGH data.
BIOINFORMATICS. 2009; 25(6): 703-713. Doi: 10.1093/bioinformatics/btp022 [OPEN ACCESS]
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** Schimek, MG Semiparametric penalized generalized additive models for environmental research and epidemiology
ENVIRONMETRICS. 2009; 20(6): 699-717. Doi: 10.1002/env.972
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2007

Editorial

** Wilcox, RR; Sheather, S; Brunner, E; Schimek, MG Nonparametric and robust methods
COMPUT STAT DATA ANAL. 2007; 51(10): 5010-5012. Doi: 10.1016/j.csda.2006.10.026
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2006

Full paper/article (Journal)

** Zebisch, A; Staber, PB; Delavar, A; Bodner, C; Hiden, K; Fischereder, K; Janakiraman, M; Linkesch, W; Auner, HW; Emberger, W; Windpassinger, C; Schimek, MG; Hoefler, G; Troppmair, J; Sill, H Two transforming C-RAF germ-line mutations identified in patients with therapy-related acute myeloid leukemia.
Cancer Res. 2006; 66(7):3401-3408 Doi: 10.1158/0008-5472.CAN-05-0115 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG Google Scholar

2005

Short report/Letter

** Sill, H; Olipitz, W; Schimek, MG Therapy-related myelodysplastic syndrome and acute myeloid leukemia after autologous bone marrow transplantation: dosis facit venenum?
J CLIN ONCOL. 2005; 23: 8120-8121. Doi: 10.1200/JCO.2005.03.0643 [OPEN ACCESS]
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2004

Full paper/article (Journal)

** Auner, HW; Zebisch, A; Schimek, MG; Bodner, C; Hiden, K; Linkesch, W; Haas, OA; Beham-Schmid, C; Sill, H High expression of the sister-chromatid separation regulator and proto-oncogene hSecurin occurs in a subset of myeloid leukaemias but is not implicated in the pathogenesis of aneuploidy.
Leukemia. 2004; 18(2):303-308 Doi: 10.1038/sj.leu.2403235 [OPEN ACCESS]
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** Neuberger, M; Schimek, MG; Horak, F; Moshammer, H; Kundi, M; Frischer, T; Gomiscek, B; Puxbaum, H; Hauck, H Acute effects of particulate matter on respiratory diseases, symptoms and functions: epidemiological results of the Austrian Project on Health Effects of Particulate Matter (AUPHEP)
ATMOS ENVIRON. 2004; 38: 3971-3981. Doi: 10.1016/j.atmosenv.2003.12.044
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** Schimek, MG Penalized binary regression for gene expression profiling.
METHODS INFORM MED. 2004; 43(5): 439-444. Doi: 10.1267/METH04050439
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** Trubel, W; Schima, H; Czerny, M; Perktold, K; Schimek, MG; Polterauer, P Experimental comparison of four methods of end-to-side anastomosis with expanded polytetrafluoroethylene.
BRIT J SURG. 2004; 91(2): 159-167. Doi: 10.1002/bjs.4388
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Abstract (Journal)

** Zebisch, A; Staber, PB; Fischereder, K; Bodner, C; Hiden, K; Linkesch, W; Auner, HW; Emberger, W; Windpassinger, C; Schimek, MG; Hoefler, G; Troppmair, J; Sill, H Two novel activating germline mutations of the C-RAF proto-oncogene predisposing to solid tbmors and therapy-related acute myeloid leukemia.
BLOOD 2004 104: 920A-920A. Doi: 10.1182/blood.V104.11.3370.3370
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2001

Editorial

** Schimek, MG Guest editorial: Semiparametric function estimation and testing
STAT COMPUT 2001 11: 291-292. Doi: 10.1023/A:1011973117955
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2000

Full paper/article (Journal)

** Schimek, MG Estimation and inference in partially linear models with smoothing splines
J STATIST PLAN INFER 2000 91: 525-540. Doi: 10.1016/S0378-3758(00)00197-X
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1998

Full paper/article (Journal)

** Eubank, RL; Kambour, EL; Kim, JT; Klipple, K; Reese, CS; Schimek, M Estimation in partially linear models
COMPUT STAT DATA ANAL 1998 29: 27-34. Doi: 10.1016/S0167-9473(98)00054-1
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1997

Full paper/article (Journal)

** Schimek, MG Non- and semiparametric alternatives to generalized linear models
COMPUTATION STAT 1997 12: 173-191.
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1995

Editorial

** SCHIMEK, MG COMPSTAT-94 SATELLITE MEETING ON SMOOTHING - STATISTICAL-THEORY AND COMPUTATIONAL ASPECTS
COMPUT STAT DATA ANAL 1995 19: 607-609.
Web of Science

1994

Full paper/article (Journal)

** SCHIMEK, MG; SCHMARANZ, KG DEPENDENT ERROR REGRESSION SMOOTHING - A NEW METHOD AND PC PROGRAM
COMPUT STAT DATA ANAL. 1994; 17(4): 457-464. Doi: 10.1016/0167-9473(94)90024-8
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1993

Full paper/article (Journal)

** SCHIMEK, MG; SCHMARANZ, KG THE STATISTICAL COMPUTING ENVIRONMENT XPLORE AND STATE-OF-THE-ART DENSITY AND REGRESSION SMOOTHING
STAT COMPUT. 1993; 3(1): 23-26. Doi: 10.1007/BF00146950
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1992

Full paper/article (Journal)

** Winklhofer-Roob, BM; Shmerling, DH; Schimek, MG; Tuchschmid, PE Short-term changes in erythrocyte alpha-tocopherol content of vitamin E-deficient patients with cystic fibrosis.
AMER J CLIN NUTR. 1992; 55(1): 100-103. Doi: 10.1093/ajcn/55.1.100 [OPEN ACCESS]
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1990

Short report/Letter

** Millner, MM; Schimek, MG; Muellegger, RR; Stanek, G Borrelia burgdorferi ELISA titres in children with recent mumps meningitis.
LANCET. 1990; 336(8707): 125-126. Doi: 10.1016/0140-6736(90)91649-U
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1989

Full paper/article (Journal)

** Millner, M; Schimek, MG; Spork, D; Schnizer, M; Stanek, G Lyme borreliosis in children. A controlled clinical study based on ELISA values.
EUR J PEDIAT. 1989; 148(6): 527-530. Doi: 10.1007/BF00441549
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