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Mahnert Alexander |

** = Publications listed in SCI/SSCI/Pubmed

2025

Full paper/article (Journal)

** Mohammadzadeh, R; Mahnert, A; Shinde, T; Kumpitsch, C; Weinberger, V; Schmidt, H; Moissl-Eichinger, C Age-related dynamics of predominant methanogenic archaea in the human gut microbiome.
BMC Microbiol. 2025; 25(1):193 Doi: 10.1186/s12866-025-03921-9 [OPEN ACCESS]
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** Neumann, CJ; Mohammadzadeh, R; Woh, PY; Kobal, T; Pausan, M-R; Shinde, T; Haid, V; Mertelj, P; Weiss, E-C; Kolovetsiou-Kreiner, V; Mahnert, A; Kumpitsch, C; Jantscher-Krenn, E; Moissl-Eichinger, C First-year dynamics of the anaerobic microbiome and archaeome in infants' oral and gastrointestinal systems.
mSystems. 2025; 10(1):e0107124 Doi: 10.1128/msystems.01071-24 [OPEN ACCESS]
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2024

Full paper/article (Journal)

** Duller, S; Kumpitsch, C; Moissl-Eichinger, C; Wink, L; Koskinen, Mora, K; Mahnert, A In-hospital areas with distinct maintenance and staff/patient traffic have specific microbiome profiles, functions, and resistomes.
mSystems. 2024; e0072624 Doi: 10.1128/msystems.00726-24 [OPEN ACCESS]
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** Duller, S; Vrbancic, S; Szydłowski, Ł; Mahnert, A; Blohs, M; Predl, M; Kumpitsch, C; Zrim, V; Högenauer, C; Kosciolek, T; Schmitz, RA; Eberhard, A; Dragovan, M; Schmidberger, L; Zurabischvili, T; Weinberger, V; Moser, AM; Kolb, D; Pernitsch, D; Mohammadzadeh, R; Kühnast, T; Rattei, T; Moissl-Eichinger, C Targeted isolation of Methanobrevibacter strains from fecal samples expands the cultivated human archaeome.
Nat Commun. 2024; 15(1): 7593 Doi: 10.1038/s41467-024-52037-7 [OPEN ACCESS]
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** Lackner, S; Mahnert, A; Moissl-Eichinger, C; Madl, T; Habisch, H; Meier-Allard, N; Kumpitsch, C; Lahousen, T; Kohlhammer-Dohr, A; Mörkl, S; Strobl, H; Holasek, S Interindividual differences in aronia juice tolerability linked to gut microbiome and metabolome changes-secondary analysis of a randomized placebo-controlled parallel intervention trial.
Microbiome. 2024; 12(1): 49 Doi: 10.1186/s40168-024-01774-4 [OPEN ACCESS]
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** Neumann, CJ; Pausan, M-R; Haid, V; Weiss, E-C; Kolovetsiou-Kreiner, V; Amtmann, B; Winkler, P; Mahnert, A; Jantscher-Krenn, E; Moissl-Eichinger, C The dynamics of the female microbiome: unveiling abrupt changes of microbial domains across body sites from prepartum to postpartum phases.
Microbiol Spectr. 2024; 12(8):e0014724 Doi: 10.1128/spectrum.00147-24 [OPEN ACCESS]
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2023

Full paper/article (Journal)

** Blohs, M; Mahnert, A; Brunnader, K; Flucher, C; Castellani, C; Till, H; Singer, G; Moissl-Eichinger, C Acute appendicitis manifests as two microbiome state types with oral pathogens influencing severity.
Gut Microbes. 2023; 15(1):2145845 Doi: 10.1080/19490976.2022.2145845 [OPEN ACCESS]
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** Neumann, CJ; Mahnert, A; Kumpitsch, C; Kiu, R; Dalby, MJ; Kujawska, M; Madl, T; Kurath-Koller, S; Urlesberger, B; Resch, B; Hall, LJ; Moissl-Eichinger, C Clinical NEC prevention practices drive different microbiome profiles and functional responses in the preterm intestine.
Nat Commun. 2023; 14(1):1349 Doi: 10.1038/s41467-023-36825-1 [OPEN ACCESS]
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2022

Full paper/article (Journal)

** Chibani, CM; Mahnert, A; Borrel, G; Almeida, A; Werner, A; Brugère, JF; Gribaldo, S; Finn, RD; Schmitz, RA; Moissl-Eichinger, C A catalogue of 1,167 genomes from the human gut archaeome.
Nat Microbiol. 2022; 7(1):48-61 Doi: 10.1038/s41564-021-01020-9 [OPEN ACCESS]
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** Klymiuk, I; Bilgilier, C; Mahnert, A; Prokesch, A; Heininger, C; Brandl, I; Sahbegovic, H; Singer, C; Fuereder, T; Steininger, C Chemotherapy-associated oral microbiome changes in breast cancer patients.
Front Oncol. 2022; 12:949071 Doi: 10.3389/fonc.2022.949071 [OPEN ACCESS]
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** Pausan, MR; Blohs, M; Mahnert, A; Moissl-Eichinger, C The sanitary indoor environment-a potential source for intact human-associated anaerobes.
NPJ Biofilms Microbiomes. 2022; 8(1):44 Doi: 10.1038/s41522-022-00305-z [OPEN ACCESS]
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Review

** Hoegenauer, C; Hammer, HF; Mahnert, A; Moissl-Eichinger, C Methanogenic archaea in the human gastrointestinal tract.
Nat Rev Gastroenterol Hepatol. 2022; 19(12):805-813 Doi: 10.1038/s41575-022-00673-z
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** Kuehnast, T; Abbott, C; Pausan, MR; Pearce, DA; Moissl-Eichinger, C; Mahnert, A The crewed journey to Mars and its implications for the human microbiome.
Microbiome. 2022; 10(1):26 Doi: 10.1186/s40168-021-01222-7 [OPEN ACCESS]
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** Mohammadzadeh, R; Mahnert, A; Duller, S; Moissl-Eichinger, C Archaeal key-residents within the human microbiome: characteristics, interactions and involvement in health and disease.
Curr Opin Microbiol. 2022; 67:102146 Doi: 10.1016/j.mib.2022.102146
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Correction

** Chibani, CM; Mahnert, A; Borrel, G; Almeida, A; Werner, A; Brugère, JF; Gribaldo, S; Finn, RD; Schmitz, RA; Moissl-Eichinger, C Publisher Correction: A catalogue of 1,167 genomes from the human gut archaeome.
Nat Microbiol. 2022; 7(2): 339 Doi: 10.1038/s41564-022-01061-8 [OPEN ACCESS]
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2021

Full paper/article (Journal)

** Bashir, AK; Wink, L; Duller, S; Schwendner, P; Cockell, C; Rettberg, P; Mahnert, A; Beblo-Vranesevic, K; Bohmeier, M; Rabbow, E; Gaboyer, F; Westall, F; Walter, N; Cabezas, P; Garcia-Descalzo, L; Gomez, F; Malki, M; Amils, R; Ehrenfreund, P; Monaghan, E; Vannier, P; Marteinsson, V; Erlacher, A; Tanski, G; Strauss, J; Bashir, M; Riedo, A; Moissl-Eichinger, C Taxonomic and functional analyses of intact microbial communities thriving in extreme, astrobiology-relevant, anoxic sites.
Microbiome. 2021; 9(1):50 Doi: 10.1186/s40168-020-00989-5 [OPEN ACCESS]
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** Kumpitsch, C; Fischmeister, FPS; Mahnert, A; Lackner, S; Wilding, M; Sturm, C; Springer, A; Madl, T; Holasek, S; Högenauer, C; Berg, IA; Schoepf, V; Moissl-Eichinger, C Reduced B12 uptake and increased gastrointestinal formate are associated with archaeome-mediated breath methane emission in humans.
Microbiome. 2021; 9(1):193 Doi: 10.1186/s40168-021-01130-w [OPEN ACCESS]
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** Mahnert, A; Verseux, C; Schwendner, P; Koskinen, K; Kumpitsch, C; Blohs, M; Wink, L; Brunner, D; Goessler, T; Billi, D; Moissl-Eichinger, C Microbiome dynamics during the HI-SEAS IV mission, and implications for future crewed missions beyond Earth.
Microbiome. 2021; 9(1):27 Doi: 10.1186/s40168-020-00959-x [OPEN ACCESS]
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2019

Full paper/article (Journal)

** Mahnert, A; Moissl-Eichinger, C; Zojer, M; Bogumil, D; Mizrahi, I; Rattei, T; Martinez, JL; Berg, G Man-made microbial resistances in built environments.
Nat Commun. 2019; 10(1):968 Doi: 10.1038/s41467-019-08864-0 [OPEN ACCESS]
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** Mora, M; Wink, L; Kögler, I; Mahnert, A; Rettberg, P; Schwendner, P; Demets, R; Cockell, C; Alekhova, T; Klingl, A; Krause, R; Zolotariof, A; Alexandrova, A; Moissl-Eichinger, C Space Station conditions are selective but do not alter microbial characteristics relevant to human health.
Nat Commun. 2019; 10(1):3990 Doi: 10.1038/s41467-019-11682-z [OPEN ACCESS]
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2018

Full paper/article (Journal)

** Mahnert, A; Haratani, M; Schmuck, M; Berg, G Enriching Beneficial Microbial Diversity of Indoor Plants and Their Surrounding Built Environment With Biostimulants.
Front Microbiol. 2018; 9:2985 Doi: 10.3389/fmicb.2018.02985 [OPEN ACCESS]
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** Mahnert, A; Ortega, RA; Berg, C; Grube, M; Berg, G Leaves of Indoor Ornamentals Are Biodiversity and Functional Hotspots for Fungi.
Front Microbiol. 2018; 9:2343 Doi: 10.3389/fmicb.2018.02343 [OPEN ACCESS]
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Review

** Mahnert, A; Blohs, M; Pausan, MR; Moissl-Eichinger, C The human archaeome: methodological pitfalls and knowledge gaps.
Emerg Top Life Sci. 2018; 2(4): 469-482. Doi: 10.1042/ETLS20180037
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2017

Full paper/article (Journal)

** Koskinen, K; Rettberg, P; Pukall, R; Auerbach, A; Wink, L; Barczyk, S; Perras, A; Mahnert, A; Margheritis, D; Kminek, G; Moissl-Eichinger, C Microbial biodiversity assessment of the European Space Agency's ExoMars 2016 mission.
Microbiome. 2017; 5(1):143 Doi: 10.1186/s40168-017-0358-3 [OPEN ACCESS]
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** Schwendner, P; Mahnert, A; Koskinen, K; Moissl-Eichinger, C; Barczyk, S; Wirth, R; Berg, G; Rettberg, P Preparing for the crewed Mars journey: microbiota dynamics in the confined Mars500 habitat during simulated Mars flight and landing.
Microbiome. 2017; 5(1):129 Doi: 10.1186/s40168-017-0345-8 [OPEN ACCESS]
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2016

Full paper/article (Journal)

** Ortega, RA; Mahnert, A; Berg, C; Müller, H; Berg, G The plant is crucial: specific composition and function of the phyllosphere microbiome of indoor ornamentals.
FEMS Microbiol Ecol. 2016; 92(12): Doi: 10.1093/femsec/fiw173 [OPEN ACCESS]
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Review

** Mora, M; Mahnert, A; Koskinen, K; Pausan, MR; Oberauner-Wappis, L; Krause, R; Perras, AK; Gorkiewicz, G; Berg, G; Moissl-Eichinger, C Microorganisms in Confined Habitats: Microbial Monitoring and Control of Intensive Care Units, Operating Rooms, Cleanrooms and the International Space Station.
Front Microbiol. 2016; 7:1573 Doi: 10.3389/fmicb.2016.01573 [OPEN ACCESS]
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2015

Full paper/article (Journal)

** Mahnert, A; Moissl-Eichinger, C; Berg, G Microbiome interplay: plants alter microbial abundance and diversity within the built environment.
Front Microbiol. 2015; 6:887 Doi: 10.3389/fmicb.2015.00887 [OPEN ACCESS]
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** Mahnert, A; Vaishampayan, P; Probst, AJ; Auerbach, A; Moissl-Eichinger, C; Venkateswaran, K; Berg, G Cleanroom Maintenance Significantly Reduces Abundance but Not Diversity of Indoor Microbiomes.
PLoS One. 2015; 10(8):e0134848-e0134848 Doi: 10.1371/journal.pone.0134848 [OPEN ACCESS]
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** Moissl-Eichinger, C; Auerbach, AK; Probst, AJ; Mahnert, A; Tom, L; Piceno, Y; Andersen, GL; Venkateswaran, K; Rettberg, P; Barczyk, S; Pukall, R; Berg, G Quo vadis? Microbial profiling revealed strong effects of cleanroom maintenance and routes of contamination in indoor environments.
Sci Rep. 2015; 5(8):9156-9156 Doi: 10.1038/srep09156 [OPEN ACCESS]
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2014

Full paper/article (Journal)

** Bauermeister, A; Mahnert, A; Auerbach, A; Böker, A; Flier, N; Weber, C; Probst, AJ; Moissl-Eichinger, C; Haberer, K Quantification of encapsulated bioburden in spacecraft polymer materials by cultivation-dependent and molecular methods.
PLoS One. 2014; 9(4):e94265-e94265 Doi: 10.1371/journal.pone.0094265 [OPEN ACCESS]
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** Berg, G; Mahnert, A; Moissl-Eichinger, C Beneficial effects of plant-associated microbes on indoor microbiomes and human health?
Front Microbiol. 2014; 5(4):15-15 Doi: 10.3389/fmicb.2014.00015 [OPEN ACCESS]
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2012

Full paper/article (Journal)

** Probst, A; Mahnert, A; Weber, C; Haberer, K; Moissl-Eichinger, C Detecting inactivated endospores in fluorescence microscopy using propidium monoazide
INT J ASTROBIOL. 2012; 11(2): 117-123. Doi: 10.1017/S1473550411000425
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