Medizinische Universität Graz Austria/Österreich - Forschungsportal - Medical University of Graz
Pfeifer Bastian |
** = Publikationen gelistet in SCI/SSCI/Pubmed
2025
Originalarbeit (Zeitschrift)
** Pfeifer, B; Gevaert, A; Loecher, M; Holzinger, A
Tree smoothing: Post-hoc regularization of tree ensembles for interpretable machine learning
INFORM SCIENCES. 2025; 690: 121564
Doi: 10.1016/j.ins.2024.121564
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** Sirocchi, C; Urschler, M; Pfeifer, B
Feature graphs for interpretable unsupervised tree ensembles: centrality, interaction, and application in disease subtyping.
BioData Min. 2025; 18(1): 15
Doi: 10.1186/s13040-025-00430-3
[OPEN ACCESS]
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2024
Originalarbeit (Zeitschrift)
** Hausleitner, C; Mueller, H; Holzinger, A; Pfeifer, B
Collaborative weighting in federated graph neural networks for disease classification with the human-in-the-loop.
Sci Rep. 2024; 14(1): 21839
Doi: 10.1038/s41598-024-72748-7
[OPEN ACCESS]
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** Metsch, JM; Saranti, A; Angerschmid, A; Pfeifer, B; Klemt, V; Holzinger, A; Hauschild, AC
CLARUS: An interactive explainable AI platform for manual counterfactuals in graph neural networks.
J Biomed Inform. 2024; 150:104600
Doi: 10.1016/j.jbi.2024.104600
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** Pfeifer, B; Kapan, DD; Herzog, SA
Detection and quantification of introgression using Bayesian inference based on conjugate priors.
Bioinformatics. 2024; 40(11):
Doi: 10.1093/bioinformatics/btae642
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** Pfeifer, B; Sirocchi, C; Bloice, MD; Kreuzthaler, M; Urschler, M
Federated unsupervised random forest for privacy-preserving patient stratification.
Bioinformatics. 2024; 40(Supplement_2): ii198-ii207.
Doi: 10.1093/bioinformatics/btae382
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** Schimek, MG; Vitale, L; Pfeifer, B; La Rocca, M
Effective signal reconstruction from multiple ranked lists via convex optimization
DATA MIN KNOWL DISC. 2024;
Doi: 10.1007/s10618-023-00991-z
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Übersichtsarbeit
** Saranti, A; Pfeifer, B; Gollob, C; Stampfer, K; Holzinger, A
From 3D point-cloud data to explainable geometric deep learning: State-of-the-art and future challenges
WIRES DATA MIN KNOWL. 2024;
Doi: 10.1002/widm.1554
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Korrektur
** Schimek, MG; Vitale, L; Pfeifer, B; La Rocca, M
Effective signal reconstruction from multiple ranked lists via convex optimization (JAN, 10.1007/s10618-023-00991-z, 2024)
DATA MIN KNOWL DISC. 2024;
Doi: 10.1007/s10618-024-01009-y
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Originalarbeit (Konferenzband)
** Kreuzthaler, M; Pfeifer, B; Schulz, S
Secondary Use of Clinical Problem List Descriptions for Bi-Encoder Based ICD-10 Classification.
AMIA Annu Symp Proc. 2024; 2024:620-627
[OPEN ACCESS]
PubMed
2023
Originalarbeit (Zeitschrift)
** Kreuzthaler, M; Pfeifer, B; Kramer, D; Schulz, S
Secondary Use of Clinical Problem List Entries for Neural Network-Based Disease Code Assignment.
Stud Health Technol Inform. 2023; 302: 788-792.
Doi: 10.3233/SHTI230267
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** Kugic, A; Pfeifer, B; Schulz, S; Kreuzthaler, M
Data-Driven Identification of Clinical Real-World Expressions Linked to ICD.
Stud Health Technol Inform. 2023; 302: 827-828.
Doi: 10.3233/SHTI230279
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** Kugic, A; Pfeifer, B; Schulz, S; Kreuzthaler, M
Embedding-based terminology expansion via secondary use of large clinical real-world datasets.
J Biomed Inform. 2023; 147:104497
Doi: 10.1016/j.jbi.2023.104497
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** Pfeifer, B; Bloice, MD; Schimek, MG
Parea: Multi-view ensemble clustering for cancer subtype discovery.
J Biomed Inform. 2023; 143:104406
Doi: 10.1016/j.jbi.2023.104406
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** Pfeifer, B; Chereda, H; Martin, R; Saranti, A; Clemens, S; Hauschild, AC; Beißbarth, T; Holzinger, A; Heider, D
Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification.
Bioinformatics. 2023; 39(11):
Doi: 10.1093/bioinformatics/btad703
[OPEN ACCESS]
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Korrektur
** Finzel, B; Saranti, A; Angerschmid, A; Tafler, D; Pfeifer, B; Holzinger, A
Generating Explanations for Conceptual Validation of Graph Neural Networks: An Investigation of Symbolic Predicates Learned on Relevance-Ranked Sub-Graphs (vol 36, pg 271, 2022)
KUNSTL INTELL. 2023;
Doi: 10.1007/s13218-022-00789-z
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2022
Originalarbeit (Zeitschrift)
** Finzel, B; Saranti, A; Angerschmid, A; Tafler, D; Pfeifer, B; Holzinger, A
Generating Explanations for Conceptual Validation of Graph Neural Networks
KUNSTL INTELL. 2022;
Doi: 10.1007/s13218-022-00781-7
[OPEN ACCESS]
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** Pfeifer, B; Baniecki, H; Saranti, A; Biecek, P; Holzinger, A
Multi-omics disease module detection with an explainable Greedy Decision Forest.
Sci Rep. 2022; 12(1): 16857
Doi: 10.1038/s41598-022-21417-8
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** Pfeifer, B; Saranti, A; Holzinger, A
GNN-SubNet: disease subnetwork detection with explainable graph neural networks.
Bioinformatics. 2022; 38(Supplement_2): ii120-ii126.
Doi: 10.1093/bioinformatics/btac478
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** Saranti, A; Hudec, M; Mináriková, E; Takác̆, Z; Großschedl, U; Koch, C; Pfeifer, B; Angerschmid, A; Holzinger, A
Actionable Explainable AI (AxAI): A Practical Example with Aggregation Functions for Adaptive Classification and Textual Explanations for Interpretable Machine Learning.
Machine Learning and Knowledge Extraction. 2022; 4(4): 924-953.
Doi: 10.3390/make4040047
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Kurzbericht/Letter
** Pfeifer, B; Holzinger, A; Schimek, MG
Robust Random Forest-Based All-Relevant Feature Ranks for Trustworthy AI.
Stud Health Technol Inform. 2022; 294: 137-138.
Doi: 10.3233/SHTI220418
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2021
Originalarbeit (Zeitschrift)
** Holzinger, A; Malle, B; Saranti, A; Pfeifer, B
Towards multi-modal causability with Graph Neural Networks enabling information fusion for explainable AI
INFORM FUSION. 2021; 71: 28-37.
Doi: 10.1016/j.inffus.2021.01.008
[OPEN ACCESS]
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** Pfeifer, B; Schimek, MG
A hierarchical clustering and data fusion approach for disease subtype discovery.
J Biomed Inform. 2021; 113:103636
Doi: 10.1016/j.jbi.2020.103636
[OPEN ACCESS]
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2020
Originalarbeit (Zeitschrift)
** Pfeifer, B; Alachiotis, N; Pavlidis, P; Schimek, MG
Genome scans for selection and introgression based on k-nearest neighbour techniques.
Mol Ecol Resour. 2020; 20(6):1597-1609
Doi: 10.1111/1755-0998.13221
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2019
Originalarbeit (Zeitschrift)
** Kreuzthaler, M; Pfeifer, B; Vera Ramos, JA; Kramer, D; Grogger, V; Bredenfeldt, S; Pedevilla, M; Krisper, P; Schulz, S
EHR problem list clustering for improved topic-space navigation.
BMC Med Inform Decis Mak. 2019; 19(Suppl 3):72-72
Doi: 10.1186/s12911-019-0789-9
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** Pfeifer, B; Kapan, DD
Estimates of introgression as a function of pairwise distances.
BMC BIOINFORMATICS. 2019; 20(1): 207-207.
Doi: 10.1186/s12859-019-2747-z
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2018
Originalarbeit (Zeitschrift)
** Kreuzthaler, M; Pfeifer, B; Vera Ramos, JA; Kramer, D; Grogger, V; Bredenfeldt, S; Pedevilla, M; Krisper, P; Schulz, S
EHR Text Categorization for Enhanced Patient-Based Document Navigation.
Stud Health Technol Inform. 2018; 248: 100-107.
PubMed
** Pfeifer, B; Lercher, MJ
BlockFeST: Bayesian calculation of region-specific FST to detect local adaptation.
Bioinformatics. 2018; 34(18): 3205-3207.
Doi: 10.1093/bioinformatics/bty299
[OPEN ACCESS]
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2015
Originalarbeit (Zeitschrift)
** Wittelsbürger, U; Pfeifer, B; Lercher, MJ
WhopGenome: high-speed access to whole-genome variation and sequence data in R.
Bioinformatics. 2015; 31(3): 413-415.
Doi: 10.1093/bioinformatics/btu636
[OPEN ACCESS]
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2014
Originalarbeit (Zeitschrift)
** Pfeifer, B; Wittelsbürger, U; Ramos-Onsins, SE; Lercher, MJ
PopGenome: an efficient Swiss army knife for population genomic analyses in R.
Mol Biol Evol. 2014; 31(7): 1929-1936.
Doi: 10.1093/molbev/msu136
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