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** = Publications listed in SCI/SSCI/Pubmed

2025

Full paper/article (Journal)

** Galeone, V; Dabernig-Heinz, J; Lohde, M; Brandt, C; Kohler, C; Wagner, GE; Hölzer, M Decoding bacterial methylomes in four public health-relevant microbial species: nanopore sequencing enables reproducible analysis of DNA modifications.
BMC Genomics. 2025; 26(1):394 Doi: 10.1186/s12864-025-11592-z [OPEN ACCESS]
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** Lichtenegger, S; Sonnleitner, ST; Saiger, S; Zauner, A; Hardt, M; Kleinhappl, B; Wagner, GE; Steinmetz, I Anti-RBD immunoglobulin levels and their predictive value for SARS-CoV-2 neutralization.
Microbiol Spectr. 2025; e0214824 Doi: 10.1128/spectrum.02148-24 [OPEN ACCESS]
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** Weigl, S; Dabernig-Heinz, J; Granitz, F; Lipp, M; Ostermann, L; Harmsen, D; Trinh, TT; Steinmetz, I; Wagner, GE; Lichtenegger, S Improving Nanopore sequencing-based core genome MLST for global infection control: a strategy for GC-rich pathogens like Burkholderia pseudomallei.
J Clin Microbiol. 2025; e0156924 Doi: 10.1128/jcm.01569-24 [OPEN ACCESS]
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2024

Full paper/article (Journal)

** Dabernig-Heinz, J; Lohde, M; Hölzer, M; Cabal, A; Conzemius, R; Brandt, C; Kohl, M; Halbedel, S; Hyden, P; Fischer, MA; Pietzka, A; Daza, B; Idelevich, EA; Stöger, A; Becker, K; Fuchs, S; Ruppitsch, W; Steinmetz, I; Kohler, C; Wagner, GE A multicenter study on accuracy and reproducibility of nanopore sequencing-based genotyping of bacterial pathogens.
J Clin Microbiol. 2024; e0062824 Doi: 10.1128/jcm.00628-24 [OPEN ACCESS]
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** Dabernig-Heinz, J; Wagner, GE; Prior, K; Lipp, M; Kienesberger, S; Ruppitsch, W; Rønning, TG; Harmsen, D; Steinmetz, I; Leitner, E Core genome multilocus sequence typing (cgMLST) applicable to the monophyletic Klebsiella oxytoca species complex.
J Clin Microbiol. 2024; 62(6):e0172523 Doi: 10.1128/jcm.01725-23 [OPEN ACCESS]
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** Desoutter, A; Deshayes, T; Vorimore, F; Klotoe, B; Durand, B; Colot, J; Wagner-Lichtenegger, G; Steinmetz, I; Tuanyok, A; Laroucau, K Isolation of Burkholderia pseudomallei from a goat in New Caledonia: implications for animal and human health monitoring and serological tool comparison.
BMC Vet Res. 2024; 20(1): 114 Doi: 10.1186/s12917-024-03957-5 [OPEN ACCESS]
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** Lohde, M; Wagner, GE; Dabernig-Heinz, J; Viehweger, A; Braun, SD; Monecke, S; Diezel, C; Stein, C; Marquet, M; Ehricht, R; Pletz, MW; Brandt, C Accurate bacterial outbreak tracing with Oxford Nanopore sequencing and reduction of methylation-induced errors.
Genome Res. 2024; Doi: 10.1101/gr.278848.123 [OPEN ACCESS]
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** Wölflingseder, M; Fengler, VH; Standhartinger, V; Wagner, GE; Reidl, J The regulatory network comprising ArcAB-RpoS-RssB influences motility in Vibrio cholerae.
Mol Microbiol. 2024; 121(5):850-864 Doi: 10.1111/mmi.15235
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2023

Full paper/article (Journal)

** Dabernig-Heinz, J; Wagner, GE; Leitner, E; Ruppitsch, W; Steinmetz, I; Högenauer, C; Zechner, EL; Kienesberger, S Complete Genome Sequence of Klebsiella oxytoca Strain AHC-6, Isolated from a Patient during Acute Antibiotic-Associated Hemorrhagic Colitis.
Microbiol Resour Announc. 2023; 12(4):e0135022 Doi: 10.1128/mra.01350-22 [OPEN ACCESS]
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** Gubensäk, N; Sagmeister, T; Buhlheller, C; Geronimo, BD; Wagner, GE; Petrowitsch, L; Gräwert, MA; Rotzinger, M; Berger, TMI; Schäfer, J; Usón, I; Reidl, J; Sánchez-Murcia, PA; Zangger, K; Pavkov-Keller, T Vibrio cholerae's ToxRS bile sensing system.
Elife. 2023; 12: Doi: 10.7554/eLife.88721 [OPEN ACCESS]
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** Mulet, M; Martinez, MJ; Gomila, M; Dabernig-Heinz, J; Wagner, GE; Kittinger, C; Zarfel, G; Lalucat, J; Garcia-Valdes, E Genome-Based Species Diversity Assessment in the Pseudomonas chlororaphis Phylogenetic Subgroup and Proposal of Pseudomonas danubii sp. nov. Isolated from Freshwaters, Soil, and Rhizosphere
DIVERSITY-BASEL. 2023; 15(5): 617 Doi: 10.3390/d15050617
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** Wagner, GE; Berner, A; Lipp, M; Kohler, C; Assig, K; Lichtenegger, S; Saqib, M; Müller, E; Trinh, TT; Gad, AM; Söffing, HH; Ehricht, R; Laroucau, K; Steinmetz, I Protein Microarray-Guided Development of a Highly Sensitive and Specific Dipstick Assay for Glanders Serodiagnostics.
J Clin Microbiol. 2023; 61(1):e0123422 Doi: 10.1128/jcm.01234-22 [OPEN ACCESS]
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** Wagner, GE; Dabernig-Heinz, J; Lipp, M; Cabal, A; Simantzik, J; Kohl, M; Scheiber, M; Lichtenegger, S; Ehricht, R; Leitner, E; Ruppitsch, W; Steinmetz, I Real-Time Nanopore Q20+ Sequencing Enables Extremely Fast and Accurate Core Genome MLST Typing and Democratizes Access to High-Resolution Bacterial Pathogen Surveillance.
J Clin Microbiol. 2023; 61(4):e0163122 Doi: 10.1128/jcm.01631-22 [OPEN ACCESS]
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** Wagner, GE; Stanjek, TFP; Albrecht, D; Lipp, M; Dunachie, SJ; Föderl-Höbenreich, E; Riedel, K; Kohler, A; Steinmetz, I; Kohler, C Deciphering the human antibody response against Burkholderia pseudomallei during melioidosis using a comprehensive immunoproteome approach.
Front Immunol. 2023; 14: 1294113 Doi: 10.3389/fimmu.2023.1294113 [OPEN ACCESS]
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2022

Full paper/article (Journal)

** Greimel, TM; Stampfer, L; Leitner, E; Kienesberger, S; Zechner, EL; Bozic, M; Wagner, GE; Unterhauser, K; Kitsera, M; Hauer, AC; Gorkiewicz, G; Wurm, P; Valitutti, F; Högenauer, C; Hoffmann, KM Toxin-Producing Klebsiella oxytoca in Healthy Infants: Commensal or Pathobiont?
J Pediatr Gastroenterol Nutr. 2022; 74(1):e1-e7 Doi: 10.1097/MPG.0000000000003299
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** Lichtenegger, S; Saiger, S; Hardt, M; Kulnik, S; Wagner, GE; Kleinhappl, B; Assig, K; Zauner, A; Ober, M; Kimpel, J; von, Laer, D; Zatloukal, K; Steinmetz, I Development of a Rapid Live SARS-CoV-2 Neutralization Assay Based on a qPCR Readout.
J Clin Microbiol. 2022; 60(7): e0037622 Doi: 10.1128/jcm.00376-22 [OPEN ACCESS]
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** Matzhold, EM; Körmöczi, GF; Banfi, C; Schönbacher, M; Drexler-Helmberg, C; Steinmetz, I; Berghold, A; Schlenke, P; Wagner, GE; Stoisser, A; Kleinhappl, B; Mayr, WR; Wagner, T Lower Levels of ABO Anti-A and Anti-B of IgM, IgG and IgA Isotypes in the Serum but Not the Saliva of COVID-19 Convalescents.
J CLIN MED. 2022; 11(15): Doi: 10.3390/jcm11154513 [OPEN ACCESS]
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** Schary, W; Paskali, F; Rentschler, S; Ruppert, C; Wagner, GE; Steinmetz, I; Deigner, HP; Kohl, M Open-Source, Adaptable, All-in-One Smartphone-Based System for Quantitative Analysis of Point-of-Care Diagnostics.
Diagnostics (Basel). 2022; 12(3): Doi: 10.3390/diagnostics12030589 [OPEN ACCESS]
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** Shaw, T; Assig, K; Tellapragada, C; Wagner, GE; Choudhary, M; Göhler, A; Eshwara, VK; Steinmetz, I; Mukhopadhyay, C Environmental Factors Associated With Soil Prevalence of the Melioidosis Pathogen Burkholderia pseudomallei: A Longitudinal Seasonal Study From South West India.
Front Microbiol. 2022; 13: 902996 Doi: 10.3389/fmicb.2022.902996 [OPEN ACCESS]
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2021

Full paper/article (Journal)

** Gubensäk, N; Schrank, E; Hartlmüller, C; Göbl, C; Falsone, FS; Becker, W; Wagner, GE; Pulido, S; Meyer, NH; Pavkov-Keller, T; Madl, T; Reidl, J; Zangger, K Structural and DNA-binding properties of the cytoplasmic domain of Vibrio cholerae transcription factor ToxR.
J Biol Chem. 2021; 297(4): 101167 Doi: 10.1016/j.jbc.2021.101167 [OPEN ACCESS]
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** Gubensäk, N; Wagner, GE; Schrank, E; Falsone, FS; Berger, TMI; Pavkov-Keller, T; Reidl, J; Zangger, K The periplasmic domains of Vibriocholerae ToxR and ToxS are forming a strong heterodimeric complex independent on the redox state of ToxR cysteines.
Mol Microbiol. 2021; 115(6):1277-1291 Doi: 10.1111/mmi.14673 [OPEN ACCESS]
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** Lichtenegger, S; Trinh, TT; Assig, K; Prior, K; Harmsen, D; Pesl, J; Zauner, A; Lipp, M; Que, TA; Mutsam, B; Kleinhappl, B; Steinmetz, I; Wagner, GE Development and Validation of a Burkholderia pseudomallei Core Genome Multilocus Sequence Typing Scheme To Facilitate Molecular Surveillance.
J Clin Microbiol. 2021; 59(8): e0009321 Doi: 10.1128/JCM.00093-21 [OPEN ACCESS]
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** Phenn, J; Pané-Farré, J; Meukow, N; Klein, A; Troitzsch, A; Tan, P; Fuchs, S; Wagner, GE; Lichtenegger, S; Steinmetz, I; Kohler, C RegAB Homolog of Burkholderia pseudomallei is the Master Regulator of Redox Control and involved in Virulence.
PLOS PATHOG. 2021; 17(5): e1009604 Doi: 10.1371/journal.ppat.1009604 [OPEN ACCESS]
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** Wagner, GE; Totaro, MG; Volland, A; Lipp, M; Saiger, S; Lichtenegger, S; Forstner, P; von, Laer, D; Oberdorfer, G; Steinmetz, I A Novel High-Throughput Nanopore-Sequencing-Based Strategy for Rapid and Automated S-Protein Typing of SARS-CoV-2 Variants.
Viruses. 2021; 13(12): Doi: 10.3390/v13122548 [OPEN ACCESS]
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Abstract (Journal)

** Gubensak, N; Wagner, GE; Schrank, E; Falsone, FS; Berger, TMI; Reidl, J; Zangger, K; Pavkov-Keller, T Investigations on Vibrio cholerae regulatory protein ToxR
ACTA CRYSTALLOGR A. 2021; 77: C862-C862.
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2020

Full paper/article (Journal)

** Lichtenegger, S; Stiehler, J; Saiger, S; Zauner, A; Kleinhappl, B; Bernecker, C; Schlenke, P; Wagner, GE; Krause, K; Gastager, M; Steinmetz, I Burkholderia pseudomallei triggers canonical inflammasome activation in a human primary macrophage-based infection model.
PLoS Negl Trop Dis. 2020; 14(11):e0008840-e0008840 Doi: 10.1371/journal.pntd.0008840 [OPEN ACCESS]
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** Monecke, S; König, E; Earls, MR; Leitner, E; Müller, E; Wagner, GE; Poitz, DM; Jatzwauk, L; Vremerǎ, T; Dorneanu, OS; Simbeck, A; Ambrosch, A; Zollner-Schwetz, I; Krause, R; Ruppitsch, W; Schneider-Brachert, W; Coleman, DC; Steinmetz, I; Ehricht, R An epidemic CC1-MRSA-IV clone yields false-negative test results in molecular MRSA identification assays: a note of caution, Austria, Germany, Ireland, 2020.
Euro Surveill. 2020; 25(25): Doi: 10.2807/1560-7917.ES.2020.25.25.2000929 [OPEN ACCESS]
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** Wagner, GE; Föderl-Höbenreich, E; Assig, K; Lipp, M; Berner, A; Kohler, C; Lichtenegger, S; Stiehler, J; Karoonboonyanan, W; Thanapattarapairoj, N; Promkong, C; Koosakulnirand, S; Chaichana, P; Ehricht, R; Gad, AM; Söffing, HH; Dunachie, SJ; Chantratita, N; Steinmetz, I Melioidosis DS rapid test: A standardized serological dipstick assay with increased sensitivity and reliability due to multiplex detection.
PLoS Negl Trop Dis. 2020; 14(7):e0008452 Doi: 10.1371/journal.pntd.0008452 [OPEN ACCESS]
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2019

Full paper/article (Journal)

** Krishna, B; Gubensäk, N; Wagner, GE; Zechner, E; Raffl, S; Becker, W; Schrank, E; Zangger, K 1H, 13C, 15N resonance assignment of the C-terminal domain of the bifunctional enzyme TraI of plasmid R1.
BIOMOL NMR ASSIGN. 2019; 13(1): 121-125. Doi: 10.1007/s12104-018-9863-y [OPEN ACCESS]
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** Trinh, TT; Assig, K; Tran, QTL; Goehler, A; Bui, LNH; Wiede, C; Folli, B; Lichtenegger, S; Nguyen, TT; Wagner, GE; Kohler, C; Steinmetz, I Erythritol as a single carbon source improves cultural isolation of Burkholderia pseudomallei from rice paddy soils.
PLoS Negl Trop Dis. 2019; 13(10):e0007821 Doi: 10.1371/journal.pntd.0007821 [OPEN ACCESS]
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** Wagner, GE; Tassoti, S; Glanzer, S; Stadler, E; Herges, R; Gescheidt, G; Zangger, K Monitoring fast chemical processes by reaction-interrupted excitation transfer (ExTra) NMR spectroscopy.
Chem Commun (Camb). 2019; 55(83): 12575-12578. Doi: 10.1039/c9cc06427c [OPEN ACCESS]
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2018

Full paper/article (Journal)

** Becker, W; Adams, LA; Graham, B; Wagner, GE; Zangger, K; Otting, G; Nitsche, C Trimethylsilyl tag for probing protein-ligand interactions by NMR.
J Biomol NMR. 2018; 70(4):211-218 Doi: 10.1007/s10858-018-0173-6
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** Dal Cortivo, G; Wagner, GE; Cortelletti, P; Padmanabha Das, KM; Zangger, K; Speghini, A; Dell'Orco, D; Meyer, NH Luminescent and paramagnetic properties of nanoparticles shed light on their interactions with proteins.
SCI REP-UK. 2018; 8(1): 3420-3420. Doi: 10.1038/s41598-018-21571-y [OPEN ACCESS]
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** Duong, LT; Schwarz, S; Gross, H; Breitbach, K; Hochgräfe, F; Mostertz, J; Eske-Pogodda, K; Wagner, GE; Steinmetz, I; Kohler, C GvmR - A Novel LysR-Type Transcriptional Regulator Involved in Virulence and Primary and Secondary Metabolism of Burkholderia pseudomallei.
FRONT MICROBIOL. 2018; 9: 935-935. Doi: 10.3389/fmicb.2018.00935 [OPEN ACCESS]
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** Hohlweg, W; Wagner, GE; Hofbauer, HF; Sarkleti, F; Setz, M; Gubensäk, N; Lichtenegger, S; Falsone, SF; Wolinski, H; Kosol, S; Oostenbrink, C; Kohlwein, SD; Zangger, K A cation-π interaction in a transmembrane helix of vacuolar ATPase retains the proton-transporting arginine in a hydrophobic environment.
J Biol Chem. 2018; 293(49):18977-18988 Doi: 10.1074/jbc.RA118.005276 [OPEN ACCESS]
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Review

** Steinmetz, I; Wagner, GE; Kanyala, E; Sawadogo, M; Soumeya, H; Teferi, M; Andargie, E; Yeshitela, B; Yaba Atsé-Achi, L; Sanogo, M; Bonfoh, B; Rakotozandrindrainy, R; Pongombo Shongo, C; Shongoya Pongombo, M; Kasamba Ilunga, E; Lichtenegger, S; Assig, K; May, J; Bertherat, E; Owusu, M; Owusu-Dabo, E; Adu-Sarkodie, Y Melioidosis in Africa: Time to Uncover the True Disease Load.
Trop Med Infect Dis. 2018; 3(2): Doi: 10.3390/tropicalmed3020062 [OPEN ACCESS]
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** Trinh, TT; Nguyen, LDN; Nguyen, TV; Tran, CX; Le, AV; Nguyen, HV; Assig, K; Lichtenegger, S; Wagner, GE; Do, CD; Steinmetz, I Melioidosis in Vietnam: Recently Improved Recognition but still an Uncertain Disease Burden after Almost a Century of Reporting.
Trop Med Infect Dis. 2018; 3(2): Doi: 10.3390/tropicalmed3020039 [OPEN ACCESS]
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2015

Full paper/article (Journal)

** Glanzer, S; Pulido, SA; Tutz, S; Wagner, GE; Kriechbaum, M; Gubensäk, N; Trifunovic, J; Dorn, M; Fabian, WM; Novak, P; Reidl, J; Zangger, K Structural and functional implications of the interaction between macrolide antibiotics and bile acids.
Chemistry. 2015; 21(11): 4350-4358. Doi: 10.1002/chem.201406413 [OPEN ACCESS]
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** Roier, S; Blume, T; Klug, L; Wagner, GE; Elhenawy, W; Zangger, K; Prassl, R; Reidl, J; Daum, G; Feldman, MF; Schild, S A basis for vaccine development: Comparative characterization of Haemophilus influenzae outer membrane vesicles.
Int J Med Microbiol. 2015; 305(3):298-309 Doi: 10.1016/j.ijmm.2014.12.005
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2014

Full paper/article (Journal)

** Wagner, GE; Gutfreund, S; Fauland, K; Keller, W; Valenta, R; Zangger, K Backbone resonance assignment of Alt a 1, a unique β-barrel protein and the major allergen of Alternaria alternata.
Biomol NMR Assign. 2014; 8(2): 229-231. Doi: 10.1007/s12104-013-9489-z [OPEN ACCESS]
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2013

Full paper/article (Journal)

** Sakhaii, P; Haase, B; Bermel, W; Kerssebaum, R; Wagner, GE; Zangger, K Broadband homodecoupled NMR spectroscopy with enhanced sensitivity.
J Magn Reson. 2013; 233(3):92-95 Doi: 10.1016/j.jmr.2013.05.008
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** Wagner, GE; Sakhaii, P; Bermel, W; Zangger, K Monitoring fast reactions by spatially-selective and frequency-shifted continuous NMR spectroscopy: application to rapid-injection protein unfolding.
Chem Commun (Camb). 2013; 49(30): 3155-3157. Doi: 10.1039/c3cc39107h [OPEN ACCESS]
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Review

** Schrank, E; Wagner, GE; Zangger, K Solution NMR studies on the orientation of membrane-bound peptides and proteins by paramagnetic probes.
Molecules. 2013; 18(7): 7407-7435. Doi: 10.3390/molecules18077407 [OPEN ACCESS]
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2012

Full paper/article (Journal)

** Falsone, SF; Meyer, NH; Schrank, E; Leitinger, G; Pham, CL; Fodero-Tavoletti, MT; Holmberg, M; Dulle, M; Scicluna, B; Gesslbauer, B; Rückert, HM; Wagner, GE; Merle, DA; Nollen, EA; Kungl, AJ; Hill, AF; Cappai, R; Zangger, K SERF protein is a direct modifier of amyloid fiber assembly.
Cell Rep. 2012; 2(2):358-371 Doi: 10.1016/j.celrep.2012.06.012 [OPEN ACCESS]
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** Kosol, S; Schrank, E; Krajačić, MB; Wagner, GE; Meyer, NH; Göbl, C; Rechberger, GN; Zangger, K; Novak, P Probing the interactions of macrolide antibiotics with membrane-mimetics by NMR spectroscopy.
J Med Chem. 2012; 55(11): 5632-5636. Doi: 10.1021/jm300647f [OPEN ACCESS]
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