** = Publikationen gelistet in SCI/SSCI/Pubmed
** Vigor, C; Züllig, T; Eichmann, TO; Oger, C; Zhou, B; Rechberger, GN; Hilsberg, L; Trötzmüller, M; Pellegrino, RM; Alabed, HBR; Hartler, J; Wolinski, H; Galano, JM; Durand, T; Spener, F
α-Linolenic acid and product octadecanoids in Styrian pumpkin seeds and oils: How processing impacts lipidomes of fatty acid, triacylglycerol and oxylipin molecular structures.
Food Chem. 2022; 371:131194
Doi: 10.1016/j.foodchem.2021.131194
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** Köfeler, HC; Eichmann, TO; Ahrends, R; Bowden, JA; Danne-Rasche, N; Dennis, EA; Fedorova, M; Griffiths, WJ; Han, X; Hartler, J; Holčapek, M; Jirásko, R; Koelmel, JP; Ejsing, CS; Liebisch, G; Ni, Z; O'Donnell, VB; Quehenberger, O; Schwudke, D; Shevchenko, A; Wakelam, MJO; Wenk, MR; Wolrab, D; Ekroos, K
Quality control requirements for the correct annotation of lipidomics data.
Nat Commun. 2021; 12(1):4771
Doi: 10.1038/s41467-021-24984-y
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** Hartler, J; Armando, AM; Trötzmüller, M; Dennis, EA; Köfeler, HC; Quehenberger, O
Anal Chem. 2020; 92(20):14054-14062
Doi: 10.1021/acs.analchem.0c03016
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** Züllig, T; Zandl-Lang, M; Trötzmüller, M; Hartler, J; Plecko, B; Köfeler, HC
A Metabolomics Workflow for Analyzing Complex Biological Samples Using a Combined Method of Untargeted and Target-List Based Approaches.
Metabolites. 2020; 10(9):
Doi: 10.3390/metabo10090342
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** Hartler, J; Triebl, A; Ziegl, A; Trötzmüller, M; Rechberger, GN; Zeleznik, OA; Zierler, KA; Torta, F; Cazenave-Gassiot, A; Wenk, MR; Fauland, A; Wheelock, CE; Armando, AM; Quehenberger, O; Zhang, Q; Wakelam, MJO; Haemmerle, G; Spener, F; Köfeler, HC; Thallinger, GG
Deciphering lipid structures based on platform-independent decision rules.
Nat Methods. 2017; 14(12): 1171-1174.
Doi: 10.1038/nmeth.4470
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** Lanfranchi, E; Pavkov-Keller, T; Koehler, EM; Diepold, M; Steiner, K; Darnhofer, B; Hartler, J; Van Den Bergh, T; Joosten, HJ; Gruber-Khadjawi, M; Thallinger, GG; Birner-Gruenberger, R; Gruber, K; Winkler, M; Glieder, A
Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily.
Sci Rep. 2017; 7(5):46738-46738
Doi: 10.1038/srep46738
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** Pauling, JK; Hermansson, M; Hartler, J; Christiansen, K; Gallego, SF; Peng, B; Ahrends, R; Ejsing, CS
Proposal for a common nomenclature for fragment ions in mass spectra of lipids.
PLoS One. 2017; 12(11): e0188394-e0188394.
Doi: 10.1371/journal.pone.0188394
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** Triebl, A; Trötzmüller, M; Hartler, J; Stojakovic, T; Köfeler, HC
Lipidomics by ultrahigh performance liquid chromatography-high resolution mass spectrometry and its application to complex biological samples.
J CHROMATOGR B. 2017; 1053(4): 72-80.
Doi: 10.1016/j.jchromb.2017.03.027
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** Trötzmüller, M; Triebl, A; Ajsic, A; Hartler, J; Köfeler, H; Regittnig, W
Determination of the Isotopic Enrichment of 13C- and 2H-Labeled Tracers of Glucose Using High-Resolution Mass Spectrometry: Application to Dual- and Triple-Tracer Studies.
Anal Chem. 2017; 89(22):12252-12260
Doi: 10.1021/acs.analchem.7b03134
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** Triebl, A; Hartler, J; Trötzmüller, M; C Köfeler, H
Lipidomics: Prospects from a technological perspective.
Biochim Biophys Acta Mol Cell Biol Lipids. 2017; 1862(8):740-746
Doi: 10.1016/j.bbalip.2017.03.004
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** Lanfranchi, E; Pavkov-Keller, T; Koehler, EM; Diepold, M; Steiner, K; Darnhofer, B; Hartler, J; Bergh, TVD; Joosten, HJ; Gruber-Khadjawi, M; Thallinger, GG; Birner-Gruenberger, R; Gruber, K; Winkler, M; Glieder, A
Erratum: Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily.
Sci Rep. 2017; 7: 46834-46834.
Doi: 10.1038/srep46834
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** Eichmann, TO; Grumet, L; Taschler, U; Hartler, J; Heier, C; Woblistin, A; Pajed, L; Kollroser, M; Rechberger, G; Thallinger, GG; Zechner, R; Haemmerle, G; Zimmermann, R; Lass, A
ATGL and CGI-58 are lipid droplet proteins of the hepatic stellate cell line HSC-T6.
J Lipid Res. 2015; 56(10):1972-84
Doi: 10.1194/jlr.M062372
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** Nasso, S; Hartler, J; Trajanoski, Z; Di Camillo, B; Mechtler, K; Toffolo, GM
3DSpectra: A 3-dimensional quantification algorithm for LC-MS labeled profile data.
J Proteomics. 2015; 112: 156-165.
Doi: 10.1016/j.jprot.2014.08.017
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** Sala, P; Pötz, S; Brunner, M; Trötzmüller, M; Fauland, A; Triebl, A; Hartler, J; Lankmayr, E; Köfeler, HC
Determination of oxidized phosphatidylcholines by hydrophilic interaction liquid chromatography coupled to Fourier transform mass spectrometry.
Int J Mol Sci. 2015; 16(4):8351-8363
Doi: 10.3390/ijms16048351
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** Griss, J; Jones, AR; Sachsenberg, T; Walzer, M; Gatto, L; Hartler, J; Thallinger, GG; Salek, RM; Steinbeck, C; Neuhauser, N; Cox, J; Neumann, S; Fan, J; Reisinger, F; Xu, QW; Del Toro, N; Pérez-Riverol, Y; Ghali, F; Bandeira, N; Xenarios, I; Kohlbacher, O; Vizcaíno, JA; Hermjakob, H
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience.
Mol Cell Proteomics. 2014; 13(10): 2765-2775.
Doi: 10.1074/mcp.O113.036681
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** Triebl, A; Trötzmüller, M; Eberl, A; Hanel, P; Hartler, J; Köfeler, HC
Quantitation of phosphatidic acid and lysophosphatidic acid molecular species using hydrophilic interaction liquid chromatography coupled to electrospray ionization high resolution mass spectrometry.
J Chromatogr A. 2014; 1347(4):104-110
Doi: 10.1016/j.chroma.2014.04.070
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** Chitraju, C; Trötzmüller, M; Hartler, J; Wolinski, H; Thallinger, GG; Haemmerle, G; Zechner, R; Zimmermann, R; Köfeler, HC; Spener, F
The impact of genetic stress by ATGL deficiency on the lipidome of lipid droplets from murine hepatocytes.
J Lipid Res. 2013; 54(8):2185-2194
Doi: 10.1194/jlr.M037952
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** Hartler, J; Tharakan, R; Köfeler, HC; Graham, DR; Thallinger, GG
Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data.
Brief Bioinform. 2013; 14(3):375-390
Doi: 10.1093/bib/bbs030
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** Ubaida Mohien, C; Colquhoun, DR; Mathias, DK; Gibbons, JG; Armistead, JS; Rodriguez, MC; Rodriguez, MH; Edwards, NJ; Hartler, J; Thallinger, GG; Graham, DR; Martinez-Barnetche, J; Rokas, A; Dinglasan, RR
A bioinformatics approach for integrated transcriptomic and proteomic comparative analyses of model and non-sequenced anopheline vectors of human malaria parasites.
Mol Cell Proteomics. 2013; 12(1):120-131
Doi: 10.1074/mcp.M112.019596
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** Chitraju, C; Trotzmuller, M; Hartler, J; Wolinski, H; Thallinger, GG; Lass, A; Zechner, R; Zimmermann, R; Kofeler, HC; Spener, F;
Lipidomic analysis of lipid droplets from murine hepatocytes reveals distinct signatures for nutritional stress.
J Lipid Res. 2012; 53(10):2141-2152
Doi: 10.1194/jlr.M028902
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** Fauland, A; Köfeler, H; Trötzmüller, M; Knopf, A; Hartler, J; Eberl, A; Chitraju, C; Lankmayr, E; Spener, F
A comprehensive method for lipid profiling by liquid chromatography-ion cyclotron resonance mass spectrometry.
J Lipid Res. 2011; 52(12):2314-2322
Doi: 10.1194/jlr.D016550
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** Hartler, J; Trötzmüller, M; Chitraju, C; Spener, F; Köfeler, HC; Thallinger, GG
Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data.
Bioinformatics. 2011; 27(4): 572-577.
Doi: 10.1093/bioinformatics/btq699
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** Ubaida Mohien, C; Hartler, J; Breitwieser, F; Rix, U; Remsing Rix, L; Winter, GE; Thallinger, GG; Bennett, KL; Superti-Furga, G; Trajanoski, Z; Colinge, J
MASPECTRAS 2: An integration and analysis platform for proteomic data.
Proteomics. 2010; 10(14):2719-2722
Doi: 10.1002/pmic.201000075
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** Hartler, J; Thallinger, GG; Stocker, G; Sturn, A; Burkard, TR; Körner, E; Rader, R; Schmidt, A; Mechtler, K; Trajanoski, Z
MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.
BMC Bioinformatics. 2007; 8:197-197
Doi: 10.1186/1471-2105-8-197
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** Maurer, M; Molidor, R; Sturn, A; Hartler, J; Hackl, H; Stocker, G; Prokesch, A; Scheideler, M; Trajanoski, Z
MARS: microarray analysis, retrieval, and storage system.
BMC Bioinformatics. 2005; 6(5): 101-101.
Doi: 10.1186/1471-2105-6-101
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** Mlecnik, B; Scheideler, M; Hackl, H; Hartler, J; Sanchez-Cabo, F; Trajanoski, Z
PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways.
Nucleic Acids Res. 2005; 33(Web Server issue):W633-W637
Doi: 10.1093/nar/gki391
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** Hackl, H; Maurer, M; Mlecnik, B; Hartler, J; Stocker, G; Miranda-Saavedra, D; Trajanoski, Z
GOLD.db: genomics of lipid-associated disorders database.
BMC Genomics. 2004; 5(1):93-93
Doi: 10.1186/1471-2164-5-93
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