** = Publications listed in SCI/SSCI/Pubmed
** Duller, S; Kumpitsch, C; Moissl-Eichinger, C; Wink, L; Koskinen, Mora, K; Mahnert, A
In-hospital areas with distinct maintenance and staff/patient traffic have specific microbiome profiles, functions, and resistomes.
mSystems. 2024; e0072624
Doi: 10.1128/msystems.00726-24
[OPEN ACCESS]
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** Mahnert, A; Verseux, C; Schwendner, P; Koskinen, K; Kumpitsch, C; Blohs, M; Wink, L; Brunner, D; Goessler, T; Billi, D; Moissl-Eichinger, C
Microbiome dynamics during the HI-SEAS IV mission, and implications for future crewed missions beyond Earth.
Microbiome. 2021; 9(1):27
Doi: 10.1186/s40168-020-00959-x
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** Kumpitsch, C; Koskinen, K; Schöpf, V; Moissl-Eichinger, C
The microbiome of the upper respiratory tract in health and disease.
BMC Biol. 2019; 17(1):87-87
Doi: 10.1186/s12915-019-0703-z
[OPEN ACCESS]
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** Bagga, D; Reichert, JL; Koschutnig, K; Aigner, CS; Holzer, P; Koskinen, K; Moissl-Eichinger, C; Schöpf, V
Probiotics drive gut microbiome triggering emotional brain signatures.
Gut Microbes. 2018; 9(6):486-496
Doi: 10.1080/19490976.2018.1460015
[OPEN ACCESS]
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** Koskinen, K; Reichert, JL; Hoier, S; Schachenreiter, J; Duller, S; Moissl-Eichinger, C; Schöpf, V
The nasal microbiome mirrors and potentially shapes olfactory function.
Sci Rep. 2018; 8(1): 1296-1296.
Doi: 10.1038/s41598-018-19438-3
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** Koskinen, K; Pausan, MR; Perras, AK; Beck, M; Bang, C; Mora, M; Schilhabel, A; Schmitz, R; Moissl-Eichinger, C
First Insights into the Diverse Human Archaeome: Specific Detection of Archaea in the Gastrointestinal Tract, Lung, and Nose and on Skin.
MBio. 2017; 8(6):
Doi: 10.1128/mBio.00824-17
[OPEN ACCESS]
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** Koskinen, K; Rettberg, P; Pukall, R; Auerbach, A; Wink, L; Barczyk, S; Perras, A; Mahnert, A; Margheritis, D; Kminek, G; Moissl-Eichinger, C
Microbial biodiversity assessment of the European Space Agency's ExoMars 2016 mission.
Microbiome. 2017; 5(1):143
Doi: 10.1186/s40168-017-0358-3
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** Leuko, S; Koskinen, K; Sanna, L; D'Angeli, IM; De Waele, J; Marcia, P; Moissl-Eichinger, C; Rettberg, P
The influence of human exploration on the microbial community structure and ammonia oxidizing potential of the Su Bentu limestone cave in Sardinia, Italy.
PLoS One. 2017; 12(7):e0180700-e0180700
Doi: 10.1371/journal.pone.0180700
[OPEN ACCESS]
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** Moissl-Eichinger, C; Probst, AJ; Birarda, G; Auerbach, A; Koskinen, K; Wolf, P; Holman, HN
Human age and skin physiology shape diversity and abundance of Archaea on skin.
Sci Rep. 2017; 7(1):4039-4039
Doi: 10.1038/s41598-017-04197-4
[OPEN ACCESS]
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** Pferschy-Wenzig, EM; Koskinen, K; Moissl-Eichinger, C; Bauer, R
A Combined LC-MS Metabolomics- and 16S rRNA Sequencing Platform to Assess Interactions between Herbal Medicinal Products and Human Gut Bacteria in Vitro: a Pilot Study on Willow Bark Extract.
Front Pharmacol. 2017; 8(2):893-893
Doi: 10.3389/fphar.2017.00893
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** Schwendner, P; Mahnert, A; Koskinen, K; Moissl-Eichinger, C; Barczyk, S; Wirth, R; Berg, G; Rettberg, P
Preparing for the crewed Mars journey: microbiota dynamics in the confined Mars500 habitat during simulated Mars flight and landing.
Microbiome. 2017; 5(1):129
Doi: 10.1186/s40168-017-0345-8
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** Wolf, A; Moissl-Eichinger, C; Perras, A; Koskinen, K; Tomazic, PV; Thurnher, D
The salivary microbiome as an indicator of carcinogenesis in patients with oropharyngeal squamous cell carcinoma: A pilot study.
Sci Rep. 2017; 7(1):5867-5867
Doi: 10.1038/s41598-017-06361-2
[OPEN ACCESS]
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** Abdel-Aziz, H; Moissl-Eichinger, C; Koskinen, K; Pferschy-Wenzig, EM; Rossmann, A; Bauer, R
Influence of the herbal extract combination STW 5 on the human intestinal microbiota in vitro
NEUROGASTROENT MOTIL. 2017; 29: 4-4.-NeuroGastro; AUG 24-26; Cork, Ireland.
[Poster]
Web of Science
** Krause, R; Horvath, L; Halwachs-Wenzl, B; Gorkiewicz, G; Kashofer, K; Moissl-Eichinger, C; Koskinen, K; Eisner, F; Vonlewinski, D; Hogenauer, C
Mycobiota analysis of samples from different body regions in ICU patients
MYCOSES. 2017; 60: 157-158.Oct 8, 2017;
[Poster]
Web of Science
** Mora, M; Mahnert, A; Koskinen, K; Pausan, MR; Oberauner-Wappis, L; Krause, R; Perras, AK; Gorkiewicz, G; Berg, G; Moissl-Eichinger, C
Microorganisms in Confined Habitats: Microbial Monitoring and Control of Intensive Care Units, Operating Rooms, Cleanrooms and the International Space Station.
Front Microbiol. 2016; 7:1573
Doi: 10.3389/fmicb.2016.01573
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** Pferschy-Wenzig, EM; Koskinen, K; Moissl-Eichinger, C; Bauer, R
In vitro study of the interaction between human gut microbiota and herbal extracts using willow bark extract as an example
PLANTA MED. 2016; 82:
Doi: 10.1055/s-0036-1596386
[Poster]
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** Reichert, JL; Koskinen, K; Moissl-Eichinger, C; Hoier, S; Schoepf, V
The Correspondence of the Nasal Microbiome and Normal Olfactory Function
CHEM SENSES. 2016; 41(7):E10-E10.-38th Annual Meeting of the Association-for-Chemoreception-Sciences (AChemS); APR 20-23, 2016; Bonita Springs, FL.
[Oral Communication]
Web of Science
** Aho, VTE; Pereira, PAB; Haahtela, T; Pawankar, R; Auvinen, P; Koskinen, K
The microbiome of the human lower airways: a next generation sequencing perspective.
World Allergy Organ J. 2015; 8(1):23-23
Doi: 10.1186/s40413-015-0074-z
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** Koskinen, K; Auvinen, P; Björkroth, KJ; Hultman, J
Inconsistent Denoising and Clustering Algorithms for Amplicon Sequence Data.
J Comput Biol. 2015; 22(8):743-751
Doi: 10.1089/cmb.2014.0268
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** Salava, A; Aho, V; Pereira, P; Koskinen, K; Paulin, L; Auvinen, P; Lauerma, A
Skin microbiome in melanomas and melanocytic nevi.
Eur J Dermatol. 2015; 26(1):49-55
Doi: 10.1684/ejd.2015.2696
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** Scheperjans, F; Aho, V; Pereira, PA; Koskinen, K; Paulin, L; Pekkonen, E; Haapaniemi, E; Kaakkola, S; Eerola-Rautio, J; Pohja, M; Kinnunen, E; Murros, K; Auvinen, P
Gut microbiota are related to Parkinson's disease and clinical phenotype.
Mov Disord. 2015; 30(3): 350-358.
Doi: 10.1002/mds.26069
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** Sun, H; Terhonen, E; Koskinen, K; Paulin, L; Kasanen, R; Asiegbu, FO;
Bacterial diversity and community structure along different peat soils in boreal forest.
APPL SOIL ECOL. 2014; 74: 37-45.
Doi: 10.1016/j.apsoil.2013.09.010
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** Sun, H; Terhonen, E; Koskinen, K; Paulin, L; Kasanen, R; Asiegbu, FO;
The impacts of treatment with biocontrol fungus (Phlebiopsis gigantea) on bacterial diversity in Norway spruce stumps.
BIOL CONTROL. 2013; 64(3): 238-246.
Doi: 10.1016/j.biocontrol.2012.11.015
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** Hanski, I; von Hertzen, L; Fyhrquist, N; Koskinen, K; Torppa, K; Laatikainen, T; Karisola, P; Auvinen, P; Paulin, L; Mäkelä, MJ; Vartiainen, E; Kosunen, TU; Alenius, H; Haahtela, T
Environmental biodiversity, human microbiota, and allergy are interrelated.
Proc Natl Acad Sci U S A. 2012; 109(21): 8334-8339.
Doi: 10.1073/pnas.1205624109
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** Nieminen, TT; Koskinen, K; Laine, P; Hultman, J; Säde, E; Paulin, L; Paloranta, A; Johansson, P; Björkroth, J; Auvinen, P
Comparison of microbial communities in marinated and unmarinated broiler meat by metagenomics.
Int J Food Microbiol. 2012; 157(2): 142-149.
Doi: 10.1016/j.ijfoodmicro.2012.04.016
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** Nieminen, TT; Välitalo, H; Säde, E; Paloranta, A; Koskinen, K; Björkroth, J
The effect of marination on lactic acid bacteria communities in raw broiler fillet strips.
Front Microbiol. 2012; 3(1):376-376
Doi: 10.3389/fmicb.2012.00376
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** Ritari, J; Koskinen, K; Hultman, J; Kurola, JM; Kymäläinen, M; Romantschuk, M; Paulin, L; Auvinen, P
Molecular analysis of meso- and thermophilic microbiota associated with anaerobic biowaste degradation.
BMC Microbiol. 2012; 12: 121-121.
Doi: 10.1186/1471-2180-12-121
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** Koskinen, K; Hultman, J; Paulin, L; Auvinen, P; Kankaanpää, H
Spatially differing bacterial communities in water columns of the northern Baltic Sea.
FEMS Microbiol Ecol. 2011; 75(1): 99-110.
Doi: 10.1111/j.1574-6941.2010.00987.x
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** Suni, S; Koskinen, K; Kauppi, S; Hannula, E; Ryynänen, T; Aalto, A; Jäänheimo, J; Ikävalko, J; Romantschuk, M
Removal by sorption and in situ biodegradation of oil spills limits damage to marine biota: a laboratory simulation.
Ambio. 2007; 36(2-3): 173-179.
Doi: 10.1579/0044-7447(2007)36[173:RBSAIS]2.0.CO;2
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