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** = Publications listed in SCI/SSCI/Pubmed

2025

Full paper/article (Journal)

** Weigl, S; Dabernig-Heinz, J; Granitz, F; Lipp, M; Ostermann, L; Harmsen, D; Trinh, TT; Steinmetz, I; Wagner, GE; Lichtenegger, S Improving Nanopore sequencing-based core genome MLST for global infection control: a strategy for GC-rich pathogens like Burkholderia pseudomallei.
J Clin Microbiol. 2025; e0156924 Doi: 10.1128/jcm.01569-24 [OPEN ACCESS]
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2024

Full paper/article (Journal)

** Dabernig-Heinz, J; Wagner, GE; Prior, K; Lipp, M; Kienesberger, S; Ruppitsch, W; Rønning, TG; Harmsen, D; Steinmetz, I; Leitner, E Core genome multilocus sequence typing (cgMLST) applicable to the monophyletic Klebsiella oxytoca species complex.
J Clin Microbiol. 2024; 62(6):e0172523 Doi: 10.1128/jcm.01725-23 [OPEN ACCESS]
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2023

Full paper/article (Journal)

** Wagner, GE; Berner, A; Lipp, M; Kohler, C; Assig, K; Lichtenegger, S; Saqib, M; Müller, E; Trinh, TT; Gad, AM; Söffing, HH; Ehricht, R; Laroucau, K; Steinmetz, I Protein Microarray-Guided Development of a Highly Sensitive and Specific Dipstick Assay for Glanders Serodiagnostics.
J Clin Microbiol. 2023; 61(1):e0123422 Doi: 10.1128/jcm.01234-22 [OPEN ACCESS]
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** Wagner, GE; Dabernig-Heinz, J; Lipp, M; Cabal, A; Simantzik, J; Kohl, M; Scheiber, M; Lichtenegger, S; Ehricht, R; Leitner, E; Ruppitsch, W; Steinmetz, I Real-Time Nanopore Q20+ Sequencing Enables Extremely Fast and Accurate Core Genome MLST Typing and Democratizes Access to High-Resolution Bacterial Pathogen Surveillance.
J Clin Microbiol. 2023; 61(4):e0163122 Doi: 10.1128/jcm.01631-22 [OPEN ACCESS]
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** Wagner, GE; Stanjek, TFP; Albrecht, D; Lipp, M; Dunachie, SJ; Föderl-Höbenreich, E; Riedel, K; Kohler, A; Steinmetz, I; Kohler, C Deciphering the human antibody response against Burkholderia pseudomallei during melioidosis using a comprehensive immunoproteome approach.
Front Immunol. 2023; 14: 1294113 Doi: 10.3389/fimmu.2023.1294113 [OPEN ACCESS]
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2021

Full paper/article (Journal)

** Lichtenegger, S; Trinh, TT; Assig, K; Prior, K; Harmsen, D; Pesl, J; Zauner, A; Lipp, M; Que, TA; Mutsam, B; Kleinhappl, B; Steinmetz, I; Wagner, GE Development and Validation of a Burkholderia pseudomallei Core Genome Multilocus Sequence Typing Scheme To Facilitate Molecular Surveillance.
J Clin Microbiol. 2021; 59(8): e0009321 Doi: 10.1128/JCM.00093-21 [OPEN ACCESS]
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** Wagner, GE; Totaro, MG; Volland, A; Lipp, M; Saiger, S; Lichtenegger, S; Forstner, P; von, Laer, D; Oberdorfer, G; Steinmetz, I A Novel High-Throughput Nanopore-Sequencing-Based Strategy for Rapid and Automated S-Protein Typing of SARS-CoV-2 Variants.
Viruses. 2021; 13(12): Doi: 10.3390/v13122548 [OPEN ACCESS]
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2020

Full paper/article (Journal)

** Wagner, GE; Föderl-Höbenreich, E; Assig, K; Lipp, M; Berner, A; Kohler, C; Lichtenegger, S; Stiehler, J; Karoonboonyanan, W; Thanapattarapairoj, N; Promkong, C; Koosakulnirand, S; Chaichana, P; Ehricht, R; Gad, AM; Söffing, HH; Dunachie, SJ; Chantratita, N; Steinmetz, I Melioidosis DS rapid test: A standardized serological dipstick assay with increased sensitivity and reliability due to multiplex detection.
PLoS Negl Trop Dis. 2020; 14(7):e0008452 Doi: 10.1371/journal.pntd.0008452 [OPEN ACCESS]
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2018

Full paper/article (Journal)

** Kittinger, C; Kirschner, A; Lipp, M; Baumert, R; Mascher, F; Farnleitner, AH; Zarfel, GE Antibiotic Resistance of Acinetobacter spp. Isolates from the River Danube: Susceptibility Stays High
INT J ENV RES PUB HE. 2018; 15(1): 52 Doi: 10.3390/ijerph15010052 [OPEN ACCESS]
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2017

Full paper/article (Journal)

** Zarfel, G; Lipp, M; Gürtl, E; Folli, B; Baumert, R; Kittinger, C Troubled water under the bridge: Screening of River Mur water reveals dominance of CTX-M harboring Escherichia coli and for the first time an environmental VIM-1 producer in Austria.
Sci Total Environ. 2017; 593-594(6):399-405 Doi: 10.1016/j.scitotenv.2017.03.138 [OPEN ACCESS]
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2016

Full paper/article (Journal)

** Kittinger, C; Lipp, M; Baumert, R; Folli, B; Koraimann, G; Toplitsch, D; Liebmann, A; Grisold, AJ; Farnleitner, AH; Kirschner, A; Zarfel, G Antibiotic Resistance Patterns of Pseudomonas spp. Isolated from the River Danube.
Front Microbiol. 2016; 7(9):586-586 Doi: 10.3389/fmicb.2016.00586 [OPEN ACCESS]
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** Kittinger, C; Lipp, M; Folli, B; Kirschner, A; Baumert, R; Galler, H; Grisold, AJ; Luxner, J; Weissenbacher, M; Farnleitner, AH; Zarfel, G Enterobacteriaceae Isolated from the River Danube: Antibiotic Resistances, with a Focus on the Presence of ESBL and Carbapenemases.
PLoS One. 2016; 11(11):e0165820 Doi: 10.1371/journal.pone.0165820 [OPEN ACCESS]
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2015

Full paper/article (Journal)

** Kittinger, C; Baumert, R; Folli, B; Lipp, M; Liebmann, A; Kirschner, A; Farnleitner, AH; Grisold, AJ; Zarfel, GE Preliminary Toxicological Evaluation of the River Danube Using in Vitro Bioassays
WATER-SUI. 2015; 7(5): 1959-1968. Doi: 10.3390/w7051959 [OPEN ACCESS]
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