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** = Publications listed in SCI/SSCI/Pubmed

2025

Full paper/article (Journal)

** Abdulnazar, A; Schulz, S; Kreuzthaler, M Smoking Status Normalization with Cross-Encoders and SNOMED CT.
Stud Health Technol Inform. 2025; 327:818-822 Doi: 10.3233/SHTI250473
PubMed FullText FullText_MUG

 

** Kugic, A; Schulz, S; Kreuzthaler, M Domain Shift in Part-of-Speech Tagging.
Stud Health Technol Inform. 2025; 327: 896-897. Doi: 10.3233/SHTI250497
PubMed FullText FullText_MUG

 

** Schulz, S; Martínez, Costa, C Semantic Representation of Medical Data Collection Forms Using Standards.
Stud Health Technol Inform. 2025; 327:708-712 Doi: 10.3233/SHTI250440
PubMed FullText FullText_MUG

 

** Specht, L; Scheible, R; Boeker, M; Farin-Glattacker, E; Kampel, N; Schmölz, M; Schöpf-Lazzarino, A; Schulz, S; Schlett, C; Thomczyk, F; Voigt-Radloff, S; Wegner, C; Wollmann, K; Maun, A Evaluating the Acceptance and Usability of an Independent, Noncommercial Search Engine for Medical Information: Cross-Sectional Questionnaire Study and User Behavior Tracking Analysis.
JMIR Hum Factors. 2025; 12:e56941 Doi: 10.2196/56941 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

2024

Full paper/article (Journal)

** Abdulnazar, A; Kreuzthaler, M; Schulz, S; Prietl, B; Herbsthofer, L Tumor Board Visualization: Integrating Clinical and Laboratory Insights.
Stud Health Technol Inform. 2024; 316: 1750-1751. Doi: 10.3233/SHTI240767
PubMed FullText FullText_MUG

 

** Abdulnazar, A; Kugic, A; Schulz, S; Stadlbauer, V; Kreuzthaler, M O2 supplementation disambiguation in clinical narratives to support retrospective COVID-19 studies.
BMC Med Inform Decis Mak. 2024; 24(1): 29 Doi: 10.1186/s12911-024-02425-2 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Abdulnazar, A; Roller, R; Schulz, S; Kreuzthaler, M Unsupervised SapBERT-based bi-encoders for medical concept annotation of clinical narratives with SNOMED CT
DIGIT HEALTH. 2024; 10: 20552076241288681 Doi: 10.1177/20552076241288681 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Abdulnazar, A; Roller, R; Schulz, S; Kreuzthaler, M Large Language Models for Clinical Text Cleansing Enhance Medical Concept Normalization
IEEE ACCESS. 2024; 12: 147981-147990. Doi: 10.1109/ACCESS.2024.3472500
Web of Science FullText FullText_MUG

 

** Aghaei, S; Celebi, R; Kreuzthaler, M; Schulz, S From Clinical Information Systems to Personalized Health Knowledge Graphs.
Stud Health Technol Inform. 2024; 316: 1463-1464. Doi: 10.3233/SHTI240689
PubMed FullText FullText_MUG

 

** de, Zegher, I; Norak, K; Steiger, D; Müller, H; Kalra, D; Scheenstra, B; Cina, I; Shulz, S; Uma, K; Kalendralis, P; Lotmam, EM; Benedikt, M; Dumontier, M; Celebi, R Artificial intelligence based data curation: enabling a patient-centric European health data space.
Front Med (Lausanne). 2024; 11: 1365501 Doi: 10.3389/fmed.2024.1365501 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Kugic, A; Schulz, S; Kreuzthaler, M Term Candidate Generation to Enrich Clinical Terminologies with Large Language Models.
Stud Health Technol Inform. 2024; 316: 695-699. Doi: 10.3233/SHTI240509
PubMed FullText FullText_MUG

 

** Kugic, A; Schulz, S; Kreuzthaler, M Disambiguation of acronyms in clinical narratives with large language models.
J Am Med Inform Assoc. 2024; 31(9):2040-2046 Doi: 10.1093/jamia/ocae157 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Riedel, A; Schulz, S; Martínez, Costa, C 'SNOMEDizing' Questionnaires for Standardizing Stroke Registry Data.
Stud Health Technol Inform. 2024; 316: 1453-1457. Doi: 10.3233/SHTI240687
PubMed FullText FullText_MUG

 

Review

** Kugic, A; Martin, I; Modersohn, L; Pallaoro, P; Kreuzthaler, M; Schulz, S; Boeker, M Processing of Short-Form Content in Clinical Narratives: Systematic Scoping Review.
J Med Internet Res. 2024; 26:e57852 Doi: 10.2196/57852 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

Full paper/article (Proceedings)

** Kreuzthaler, M; Pfeifer, B; Schulz, S Secondary Use of Clinical Problem List Descriptions for Bi-Encoder Based ICD-10 Classification.
AMIA Annu Symp Proc. 2024; 2024:620-627 [OPEN ACCESS]
PubMed PUBMED Central

 

2023

Full paper/article (Journal)

** Abdulnazar, A; Kreuzthaler, M; Roller, R; Schulz, S SapBERT-Based Medical Concept Normalization Using SNOMED CT.
Stud Health Technol Inform. 2023; 302: 825-826. Doi: 10.3233/SHTI230278
PubMed FullText FullText_MUG

 

** Kreuzthaler, M; Brochhausen, M; Zayas, C; Blobel, B; Schulz, S Linguistic and ontological challenges of multiple domains contributing to transformed health ecosystems.
Front Med (Lausanne). 2023; 10: 1073313 Doi: 10.3389/fmed.2023.1073313 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Kreuzthaler, M; Pfeifer, B; Kramer, D; Schulz, S Secondary Use of Clinical Problem List Entries for Neural Network-Based Disease Code Assignment.
Stud Health Technol Inform. 2023; 302: 788-792. Doi: 10.3233/SHTI230267
PubMed FullText FullText_MUG

 

** Kugic, A; Kreuzthaler, M; Schulz, S Clinical Acronym Disambiguation via ChatGPT and BING.
Stud Health Technol Inform. 2023; 309:78-82 Doi: 10.3233/SHTI230743
PubMed FullText FullText_MUG

 

** Kugic, A; Pfeifer, B; Schulz, S; Kreuzthaler, M Data-Driven Identification of Clinical Real-World Expressions Linked to ICD.
Stud Health Technol Inform. 2023; 302: 827-828. Doi: 10.3233/SHTI230279
PubMed FullText FullText_MUG

 

** Kugic, A; Pfeifer, B; Schulz, S; Kreuzthaler, M Embedding-based terminology expansion via secondary use of large clinical real-world datasets.
J Biomed Inform. 2023; 147:104497 Doi: 10.1016/j.jbi.2023.104497
Web of Science PubMed FullText FullText_MUG

 

** Lin, AY; Arabandi, S; Beale, T; Duncan, WD; Hicks, A; Hogan, WR; Jensen, M; Koppel, R; Martínez-Costa, C; Nytrø, Ø; Obeid, JS; de, Oliveira, JP; Ruttenberg, A; Seppälä, S; Smith, B; Soergel, D; Zheng, J; Schulz, S Improving the Quality and Utility of Electronic Health Record Data through Ontologies.
Standards (Basel). 2023; 3(3): 316-340. Doi: 10.3390/standards3030023 [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Abdulnazar, A; Kreuzthaler, M Clustering Similar Diagnosis Terms.
Stud Health Technol Inform. 2023; 302: 837-838. Doi: 10.3233/SHTI230284
PubMed FullText FullText_MUG

 

** Schulz, S; Case, JT; Hendler, P; Karlsson, D; Lawley, M; Cornet, R; Hausam, R; Solbrig, H; Nashar, K; Martínez-Costa, C; Gao, YS SNOMED CT and Basic Formal Ontology - convergence or contradiction between standards? The case of "clinical finding"
APPL ONTOL. 2023; 18(3): 207-237. Doi: 10.3233/AO-230018
Web of Science FullText FullText_MUG

 

2022

Full paper/article (Journal)

** Khaled, M; Sareban, M; Kreuzthaler, M; Schulz, S; Hussein, R Overview of Existing Tools for Extracting Health and Fitness Data from mHealth Apps.
Stud Health Technol Inform. 2022; 295: 49-50. Doi: 10.3233/SHTI220657
PubMed FullText FullText_MUG

 

** Kuiper, M; Bonello, J; Fernández-Breis, JT; Bucher, P; Futschik, ME; Gaudet, P; Kulakovskiy, IV; Licata, L; Logie, C; Lovering, RC; Makeev, VJ; Orchard, S; Panni, S; Perfetto, L; Sant, D; Schulz, S; Vercruysse, S; Zerbino, DR; Lægreid, A, , GRECO, Consortium The gene regulation knowledge commons: the action area of GREEKC.
Biochim Biophys Acta Gene Regul Mech. 2022; 1865(1):194768 Doi: 10.1016/j.bbagrm.2021.194768
Web of Science PubMed FullText FullText_MUG

 

** Modersohn, L; Schulz, S; Lohr, C; Hahn, U GRASCCO - The First Publicly Shareable, Multiply-Alienated German Clinical Text Corpus.
Stud Health Technol Inform. 2022; 296: 66-72. Doi: 10.3233/SHTI220805
PubMed FullText FullText_MUG

 

** Schulz, S; Boeker, M; Prunotto, A Validation of Multiple Path Translation for SNOMED CT Localisation.
Stud Health Technol Inform. 2022; 294: 961-962. Doi: 10.3233/SHTI220641
PubMed FullText FullText_MUG

 

Case Report

** Scheible, R; Caliskan, D; Fischer, P; Thomczyk, F; Zabka, S; Schneider, H; Boeker, M; Schulz, S; Prokosch, HU; Gulden, C AHD2FHIR: A Tool for Mapping of Natural Language Annotations to Fast Healthcare Interoperability Resources - A Technical Case Report.
Stud Health Technol Inform. 2022; 290: 32-36. Doi: 10.3233/SHTI220026 (- Case Report)
PubMed FullText FullText_MUG

 

2021

Full paper/article (Journal)

** Caliskan, D; Zierk, J; Kraska, D; Schulz, S; Daumke, P; Prokosch, HU; Kapsner, LA First Steps to Evaluate an NLP Tool's Medication Extraction Accuracy from Discharge Letters.
Stud Health Technol Inform. 2021; 278: 224-230. Doi: 10.3233/SHTI210073
PubMed FullText FullText_MUG

 

** Grundel, B; Bernardeau, MA; Langner, H; Schmidt, C; Böhringer, D; Ritter, M; Rosenthal, P; Grandjean, A; Schulz, S; Daumke, P; Stahl, A [Extraction of features from clinical routine data using text mining].
Ophthalmologe. 2021; 118(3):264-272 Doi: 10.1007/s00347-020-01177-4
Web of Science PubMed FullText FullText_MUG

 

** Jauk, S; Kramer, D; Avian, A; Berghold, A; Leodolter, W; Schulz, S Technology Acceptance of a Machine Learning Algorithm Predicting Delirium in a Clinical Setting: a Mixed-Methods Study.
J MED SYST. 2021; 45(4): 48-48. Doi: 10.1007/s10916-021-01727-6 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Juanes, Cortés, B; Vera-Ramos, JA; Lovering, RC; Gaudet, P; Laegreid, A; Logie, C; Schulz, S; Roldán-García, MDM; Kuiper, M; Fernández-Breis, JT Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models.
Biochim Biophys Acta Gene Regul Mech. 2021; 1864(11-12): 194766 Doi: 10.1016/j.bbagrm.2021.194766 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** López-Úbeda, P; Pomares-Quimbaya, A; Díaz-Galiano, MC; Schulz, S Collecting specialty-related medical terms: Development and evaluation of a resource for Spanish.
BMC Med Inform Decis Mak. 2021; 21(1):145 Doi: 10.1186/s12911-021-01495-w [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Pomares-Quimbaya, A; López-Úbeda, P; Schulz, S Transfer Learning for Classifying Spanish and English Text by Clinical Specialties.
Stud Health Technol Inform. 2021; 281: 377-381. Doi: 10.3233/SHTI210184
PubMed FullText FullText_MUG

 

** Prunotto, A; Schulz, S; Boeker, M Automatic Generation of German Translation Candidates for SNOMED CT Textual Descriptions.
Stud Health Technol Inform. 2021; 281: 178-182. Doi: 10.3233/SHTI210144
PubMed FullText FullText_MUG

 

** Sant, DW; Sinclair, M; Mungall, CJ; Schulz, S; Zerbino, D; Lovering, RC; Logie, C; Eilbeck, K Sequence Ontology terminology for gene regulation.
Biochim Biophys Acta Gene Regul Mech. 2021; 1864(10):194745 Doi: 10.1016/j.bbagrm.2021.194745
Web of Science PubMed FullText FullText_MUG

 

Correction

** Jauk, S; Kramer, D; Avian, A; Berghold, A; Leodolter, W; Schulz, S Correction to: Technology Acceptance of a Machine Learning Algorithm Predicting Delirium in a Clinical Setting: a Mixed-Methods Study.
J MED SYST. 2021; 45(4): 52-52. Doi: 10.1007/s10916-021-01728-5 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

2020

Full paper/article (Journal)

** Jauk, S; Kramer, D; Großauer, B; Rienmüller, S; Avian, A; Berghold, A; Leodolter, W; Schulz, S Risk prediction of delirium in hospitalized patients using machine learning: An implementation and prospective evaluation study.
J Am Med Inform Assoc. 2020; 27(9): 1383-1392. Doi: 10.1093/jamia/ocaa113 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Kreuzthaler, M; Oleynik, M; Schulz, S Character-Level Neural Language Modelling in the Clinical Domain.
Stud Health Technol Inform. 2020; 270:83-87 Doi: 10.3233/SHTI200127
PubMed FullText FullText_MUG

 

** Lim, MS; Beyer, T; Babayan, A; Bergmann, M; Brehme, M; Buyx, A; Czernin, J; Egger, G; Elenitoba-Johnson, KSJ; Gückel, B; Jačan, A; Haslacher, H; Hicks, RJ; Kenner, L; Langanke, M; Mitterhauser, M; Pichler, BJ; Salih, HR; Schibli, R; Schulz, S; Simecek, J; Simon, J; Soares, MO; Stelzl, U; Wadsak, W; Zatloukal, K; Zeitlinger, M; Hacker, M Advancing Biomarker Development Through Convergent Engagement: Summary Report of the 2nd International Danube Symposium on Biomarker Development, Molecular Imaging and Applied Diagnostics; March 14-16, 2018; Vienna, Austria.
Mol Imaging Biol. 2020; 22(1):47-65 Doi: 10.1007/s11307-019-01361-2 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** Pomares-Quimbaya, A; López-Úbeda, P; Oleynik, M; Schulz, S Leveraging PubMed to Create a Specialty-Based Sense Inventory for Spanish Acronym Resolution.
Stud Health Technol Inform. 2020; 270:292-296 Doi: 10.3233/SHTI200169
PubMed FullText FullText_MUG

 

** Uribe, GA; Blobel, B; Lopez, DM; Schulz, S; Ruiz, AA Ontology-Based and Architecture-Based Method for the Development of Interoperable Care Systems for Type 2 Diabetes Mellitus.
Stud Health Technol Inform. 2020; 270:352-356 Doi: 10.3233/SHTI200181 [OPEN ACCESS]
PubMed FullText FullText_MUG

 

** Zabka, S; Schulz, S; Brunner, O; Boeker, M How versioning of terminology systems can be supported by ontological models - a case study on TNM tumor classification.
APPL ONTOL. 2020; 15(1): 41-60. Doi: 10.3233/AO-190220
Web of Science FullText FullText_MUG

 

2019

Full paper/article (Journal)

** Daumke, P; Heitmann, KU; Heckmann, S; Martínez-Costa, C; Schulz, S Clinical Text Mining on FHIR.
Stud Health Technol Inform. 2019; 264:83-87 Doi: 10.3233/SHTI190188
PubMed FullText FullText_MUG

 

** Hashemian Nik, D; Kasáč, Z; Goda, Z; Semlitsch, A; Schulz, S Building an Experimental German User Interface Terminology Linked to SNOMED CT.
Stud Health Technol Inform. 2019; 264:153-157 Doi: 10.3233/SHTI190202
PubMed FullText FullText_MUG

 

** Jauk, S; Kramer, D; Stark, G; Hasiba, K; Leodolter, W; Schulz, S; Kainz, J Development of a Machine Learning Model Predicting an ICU Admission for Patients with Elective Surgery and Its Prospective Validation in Clinical Practice.
Stud Health Technol Inform. 2019; 264:173-177 Doi: 10.3233/SHTI190206
PubMed FullText FullText_MUG

 

** Kreuzthaler, M; Pfeifer, B; Vera Ramos, JA; Kramer, D; Grogger, V; Bredenfeldt, S; Pedevilla, M; Krisper, P; Schulz, S EHR problem list clustering for improved topic-space navigation.
BMC Med Inform Decis Mak. 2019; 19(Suppl 3):72-72 Doi: 10.1186/s12911-019-0789-9 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Miñarro-Giménez, JA; Cornet, R; Jaulent, MC; Dewenter, H; Thun, S; Gøeg, KR; Karlsson, D; Schulz, S Quantitative analysis of manual annotation of clinical text samples.
Int J Med Inform. 2019; 123:37-48 Doi: 10.1016/j.ijmedinf.2018.12.011 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** Pomares-Quimbaya, A; Kreuzthaler, M; Schulz, S Current approaches to identify sections within clinical narratives from electronic health records: a systematic review.
BMC Med Res Methodol. 2019; 19(1):155-155 Doi: 10.1186/s12874-019-0792-y [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Some, BMJ; Bordea, G; Thiessard, F; Schulz, S; Diallo, G Design Considerations for a Knowledge Graph: The WATRIMed Use Case.
Stud Health Technol Inform. 2019; 259: 59-64.
PubMed

 

** Vera Ramos, JA; Kreuzthaler, M; Schulz, S Supervised ICD Code Assignment to Short Clinical Problem List Entries.
Stud Health Technol Inform. 2019; 258(Suppl 3):184-188
PubMed

 

Review

** Rector, A; Schulz, S; Rodrigues, JM; Chute, CG; Solbrig, H On beyond Gruber: "Ontologies" in today's biomedical information systems and the limits of OWL.
J Biomed Inform. 2019; 100S: 100002 Doi: 10.1016/j.yjbinx.2019.100002
PubMed FullText FullText_MUG

 

2018

Full paper/article (Journal)

** Bietenbeck, A; Boeker, M; Schulz, S; NPU, LOINC, and SNOMED CT: a comparison of terminologies for laboratory results reveals individual advantages and a lack of possibilities to encode interpretive comments.
J LAB MED. 2018; 42(6): 267-275. Doi: 10.1515/labmed-2018-0103
Web of Science FullText FullText_MUG

 

** Jauk, S; Kramer, D; Schulz, S; Leodolter, W Evaluating the Impact of Incorrect Diabetes Coding on the Performance of Multivariable Prediction Models.
Stud Health Technol Inform. 2018; 251: 249-252.
PubMed

 

** Kreuzthaler, M; Pfeifer, B; Vera Ramos, JA; Kramer, D; Grogger, V; Bredenfeldt, S; Pedevilla, M; Krisper, P; Schulz, S EHR Text Categorization for Enhanced Patient-Based Document Navigation.
Stud Health Technol Inform. 2018; 248: 100-107.
PubMed

 

** Miñarro-Giménez, JA; Martínez-Costa, C; Karlsson, D; Schulz, S; Gøeg, KR Qualitative analysis of manual annotations of clinical text with SNOMED CT.
PLoS One. 2018; 13(12):e0209547-e0209547 Doi: 10.1371/journal.pone.0209547 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Miñarro-Giménez, JA; Schulz, S Analysis of MeSH Indexing Patterns and Frequency of Predicates.
Stud Health Technol Inform. 2018; 247:666-670
PubMed

 

** Rodrigues, JM; Schulz, S; Mizen, B; Trombert, B; Rector, A Scrutinizing SNOMED CT's Ability to Reconcile Clinical Language Ambiguities with an Ontology Representation.
Stud Health Technol Inform. 2018; 247: 910-914.
PubMed

 

2017

Full paper/article (Journal)

** Kasáč, Z; Schulz, S Analysis of Historical Medical Phenomena Using Large N-Gram Corpora.
Stud Health Technol Inform. 2017; 245:437-441
PubMed

 

** Kreuzthaler, M; Martínez-Costa, C; Kaiser, P; Schulz, S Semantic Technologies for Re-Use of Clinical Routine Data.
Stud Health Technol Inform. 2017; 236(18):24-31
PubMed

 

** Martinez-Costa, C; Schulz, S HL7 FHIR: Ontological Reinterpretation of Medication Resources.
Stud Health Technol Inform. 2017; 235(23):451-455
PubMed

 

** Martínez-Costa, C; Schulz, S Validating EHR clinical models using ontology patterns.
J Biomed Inform. 2017; 76(20):124-137 Doi: 10.1016/j.jbi.2017.11.001 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** Miñarro-Giménez, JA; Martínez-Costa, C; López-García, P; Schulz, S Building SNOMED CT Post-Coordinated Expressions from Annotation Groups.
Stud Health Technol Inform. 2017; 235(12):446-450
PubMed

 

** Oleynik, M; Kreuzthaler, M; Schulz, S Unsupervised Abbreviation Expansion in Clinical Narratives.
Stud Health Technol Inform. 2017; 245(11):539-543
PubMed

 

** Rodrigues, JM; Schulz, S; Mizen, B; Rector, A; Serir, S Is the Application of SNOMED CT Concept Model sufficiently Quality Assured?
AMIA Annu Symp Proc. 2017; 2017: 1488-1497. [OPEN ACCESS]
PubMed PUBMED Central

 

** Santana da Silva, F; Jansen, L; Freitas, F; Schulz, S Ontological interpretation of biomedical database content.
J Biomed Semantics. 2017; 8(1):24-24 Doi: 10.1186/s13326-017-0127-z [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Boeker, M; Martinez-Costa, C The BioTop Family of Upper Level Ontological Resources for Biomedicine.
Stud Health Technol Inform. 2017; 235:441-445
PubMed

 

** Schulz, S; Rodrigues, JM; Rector, A; Chute, CG Interface Terminologies, Reference Terminologies and Aggregation Terminologies: A Strategy for Better Integration.
Stud Health Technol Inform. 2017; 245(12):940-944
PubMed

 

2016

Full paper/article (Journal)

** Boeker, M; França, F; Bronsert, P; Schulz, S TNM-O: ontology support for staging of malignant tumours.
J Biomed Semantics. 2016; 7(1):64-64 Doi: 10.1186/s13326-016-0106-9 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Fernandez-Luque, L; Vilmarlund, V; Borycki, E; Schulz, S; Kuziemsky, C; Marschollek, M; Kulikowski, CA Social Media as Catalyzer for Connected Health: Hype or Hope? Perspectives from IMIA Working Groups.
Stud Health Technol Inform. 2016; 225(7):602-604
PubMed

 

** Kreuzthaler, M; Miñarro-Giménez, JA; Schulz, S MapReduce in the Cloud: A Use Case Study for Efficient Co-Occurrence Processing of MEDLINE Annotations with MeSH.
Stud Health Technol Inform. 2016; 228(12):582-586
PubMed

 

** López-García, P; Kreuzthaler, M; Schulz, S; Scherr, D; Daumke, P; Markó, K; Kors, JA; van Mulligen, EM; Wang, X; Gonna, H; Behr, E; Honrado, Á SEMCARE: Multilingual Semantic Search in Semi-Structured Clinical Data.
Stud Health Technol Inform. 2016; 223(3):93-99 [OPEN ACCESS]
PubMed

 

** López-García, P; Schulz, S Structural Patterns under X-Rays: Is SNOMED CT Growing Straight?
PLoS One. 2016; 11(11):e0165619-e0165619 Doi: 10.1371/journal.pone.0165619 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** López-García, P; Schulz, S Can SNOMED CT be squeezed without losing its shape?
J Biomed Semantics. 2016; 7(1):56-56 Doi: 10.1186/s13326-016-0101-1 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Mamou, M; Rector, A; Schulz, S; Campbell, J; Solbrig, H; Rodrigues, JM ICD-11 (JLMMS) and SCT Inter-Operation.
Stud Health Technol Inform. 2016; 223(1):267-272
PubMed

 

** Mamou, M; Rector, A; Schulz, S; Campbell, J; Solbrig, H; Rodrigues, JM Representing ICD-11 JLMMS Using IHTSDO Representation Formalisms.
Stud Health Technol Inform. 2016; 228:431-435
PubMed

 

** Miñarro-Giménez, JA; Martínez, MQ; Fernández-Breis, JT; Schulz, S Publishing Biomedical Predication Repository About MeSH Co-Occurrences in MEDLINE.
Stud Health Technol Inform. 2016; 228(12):765-769
PubMed

 

** Rodrigues, JM; Dhingra-Kumar, N; Schulz, S; Souvignet, J A Patient Safety Information Model for Interoperability.
Stud Health Technol Inform. 2016; 223(1):77-84
PubMed

 

2015

Full paper/article (Journal)

** Hellrich, J; Schulz, S; Buechel, S; Hahn, U JuFiT: A Configurable Rule Engine for Filtering and Generating New Multilingual Umls Terms.
AMIA Annu Symp Proc. 2015; 2015: 604-10. [OPEN ACCESS]
PubMed PUBMED Central

 

** Kreuzthaler, M; Daumke, P; Schulz, S Semantic retrieval and navigation in clinical document collections.
Stud Health Technol Inform. 2015; 212(3):9-14
PubMed

 

** Kreuzthaler, M; Schulz, S Detection of sentence boundaries and abbreviations in clinical narratives.
BMC Med Inform Decis Mak. 2015; 15 Suppl 2(1):S4-S4 Doi: 10.1186/1472-6947-15-S2-S4 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Kreuzthaler, M; Schulz, S; Berghold, A Secondary use of electronic health records for building cohort studies through top-down information extraction.
J Biomed Inform. 2015; 53: 188-195. Doi: 10.1016/j.jbi.2014.10.010 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** Martínez-Costa, C; Cornet, R; Karlsson, D; Schulz, S; Kalra, D Semantic enrichment of clinical models towards semantic interoperability. The heart failure summary use case.
J Am Med Inform Assoc. 2015; 22(3): 565-576. Doi: 10.1093/jamia/ocu013 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** Miñarro-Giménez, JA; Hellrich, J; Schulz, S Acquisition of Character Translation Rules for Supporting SNOMED CT Localizations.
Stud Health Technol Inform. 2015; 210(12):597-601
PubMed

 

** Miñarro-Giménez, JA; Kreuzthaler, M; Bernhardt-Melischnig, J; Martínez-Costa, C; Schulz, S Acquiring Plausible Predications from MEDLINE by Clustering MeSH Annotations.
Stud Health Technol Inform. 2015; 216(12):716-720
PubMed

 

** Miñarro-Giménez, JA; Kreuzthaler, M; Schulz, S Knowledge Extraction from MEDLINE by Combining Clustering with Natural Language Processing.
AMIA Annu Symp Proc. 2015; 2015(12): 915-924. [OPEN ACCESS]
PubMed PUBMED Central

 

** Rodrigues, JM; Robinson, D; Della Mea, V; Campbell, J; Rector, A; Schulz, S; Brear, H; Üstün, B; Spackman, K; Chute, CG; Millar, J; Solbrig, H; Brand Persson, K Semantic Alignment between ICD-11 and SNOMED CT.
Stud Health Technol Inform. 2015; 216: 790-794.
PubMed

 

** Rodrigues, JM; Schulz, S; Souvignet, J Integrated care: an Information Model for Patient Safety and Vigilance Reporting Systems.
Stud Health Technol Inform. 2015; 210: 434-8.
PubMed

 

** Santana, F; Schulz, S; Campos, A; Novaes, MA Towards a Formal Representation of Processes and Objects Regarding the Delivery of Telehealth Services: The Telehealth Ontology (TEON).
Stud Health Technol Inform. 2015; 216: 1108-1108.
PubMed

 

** Schulz, S; López-García, P [Big data, medical language and biomedical terminology systems].
Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2015; 58(8):844-852 Doi: 10.1007/s00103-015-2190-x
Web of Science PubMed FullText FullText_MUG

 

** Schulz, S; Martínez-Costa, C Harmonizing SNOMED CT with BioTopLite: An Exercise in Principled Ontology Alignment.
Stud Health Technol Inform. 2015; 216(1): 832-836.
PubMed

 

** Uribe, GA; Blobel, B; López, DM; Schulz, S A generic architecture for an adaptive, interoperable and intelligent type 2 diabetes mellitus care system.
Stud Health Technol Inform. 2015; 211: 121-31.
PubMed

 

2014

Full paper/article (Journal)

** Ammenwerth, E; Aly, AF; Bürkle, T; Christ, P; Dormann, H; Friesdorf, W; Haas, C; Haefeli, WE; Jeske, M; Kaltschmidt, J; Menges, K; Möller, H; Neubert, A; Rascher, W; Reichert, H; Schuler, J; Schreier, G; Schulz, S; Seidling, HM; Stühlinger, W; Criegee-Rieck, M Memorandum on the use of information technology to improve medication safety.
Methods Inf Med. 2014; 53(5):336-343 Doi: 10.3414/ME14-01-0040
Web of Science PubMed FullText FullText_MUG

 

** Blonde, W; Antezana, E; Mironov, V; Schulz, S; Kuiper, M; De Baets, B Using the relation ontology Metarel for modelling Linked Data as multi-digraphs
SEMANT WEB. 2014; 5(2): 115-126. Doi: 10.3233/SW-130096
Web of Science FullText FullText_MUG

 

** Braun, M; Brandt, AU; Schulz, S; Boeker, M Validating archetypes for the Multiple Sclerosis Functional Composite.
BMC Med Inform Decis Mak. 2014; 14(4):64-64 Doi: 10.1186/1472-6947-14-64 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Duque-Ramos, A; Boeker, M; Jansen, L; Schulz, S; Iniesta, M; Fernández-Breis, JT Evaluating the Good Ontology Design Guideline (GoodOD) with the ontology quality requirements and evaluation method and metrics (OQuaRE).
PLoS One. 2014; 9(8):e104463-e104463 Doi: 10.1371/journal.pone.0104463 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Legaz-García, Mdel C; Martínez-Costa, C; Miñarro-Giménez, JA; Fernández-Breis, JT; Schulz, S; Menárguez-Tortosa, M Ontology patterns-based transformation of clinical information.
Stud Health Technol Inform. 2014; 205(12):1018-1022
PubMed

 

** Martínez-Costa, C; Kalra, D; Schulz, S Improving EHR semantic interoperability: future vision and challenges.
Stud Health Technol Inform. 2014; 205(44):589-593
PubMed

 

** Martínez-Costa, C; Schulz, S Ontology content patterns as bridge for the semantic representation of clinical information.
Appl Clin Inform. 2014; 5(3):660-669 Doi: 10.4338/ACI-2014-04-RA-0031 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Rodrigues, JM; Schulz, S; Rector, A; Spackman, K; Millar, J; Campbell, J; Ustün, B; Chute, CG; Solbrig, H; Della Mea, V; Persson, KB ICD-11 and SNOMED CT Common Ontology: circulatory system.
Stud Health Technol Inform. 2014; 205(44):1043-1047
PubMed

 

** Schulz, S; Rodrigues, JM; Rector, A; Spackman, K; Campbell, J; Ustün, B; Chute, CG; Solbrig, H; Della Mea, V; Millar, J; Brand Persson, K What's in a class? Lessons learnt from the ICD - SNOMED CT harmonisation.
Stud Health Technol Inform. 2014; 205(44):1038-1042
PubMed

 

2013

Full paper/article (Journal)

** Balkanyi, L; Schulz, S; Cornet, R; Bodenreider, O Medical concept representation: the years beyond 2000.
Stud Health Technol Inform. 2013; 192(4):1011-1011 [OPEN ACCESS]
PubMed PUBMED Central FullText

 

** Boeker, M; Jansen, L; Grewe, N; Röhl, J; Schober, D; Seddig-Raufie, D; Schulz, S Effects of guideline-based training on the quality of formal ontologies: a randomized controlled trial.
PLoS One. 2013; 8(5):e61425-e61425 Doi: 10.1371/journal.pone.0061425 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Duque-Ramos, A; Fernandez-Breis, JT; Iniesta, M; Dumontier, M; Aranguren, ME; Schulz, S; Aussenac-Gilles, N; Stevens, R; Evaluation of the OQuaRE framework for ontology quality.
EXPERT SYST APPL. 2013; 40(7): 2696-2703. Doi: 10.1016/j.eswa.2012.11.004
Web of Science FullText FullText_MUG

 

** Martínez-Costa, C; Bosca, D; Legaz-García, MC; Tao, C; Fernández Breis, JT; Schulz, S; Chute, CG Isosemantic rendering of clinical information using formal ontologies and RDF.
Stud Health Technol Inform. 2013; 192(4):1085-1085
PubMed FullText

 

** Rodrigues, JM; Schulz, S; Rector, A; Spackman, K; Üstün, B; Chute, CG; Della Mea, V; Millar, J; Persson, KB Sharing ontology between ICD 11 and SNOMED CT will enable seamless re-use and semantic interoperability.
Stud Health Technol Inform. 2013; 192(4):343-346
PubMed FullText

 

** Schulz, S; Bernhardt-Melischnig, J; Kreuzthaler, M; Daumke, P; Boeker, M Machine vs. human translation of SNOMED CT terms.
Stud Health Technol Inform. 2013; 192:581-584
PubMed FullText

 

** Schulz, S; Jansen, L Formal ontologies in biomedical knowledge representation.
Yearb Med Inform. 2013; 8(8):132-146 Doi: 10.1055/s-0038-1638845
PubMed FullText FullText_MUG

 

Review

** Schulz, S; Balkanyi, L; Cornet, R; Bodenreider, O From concept representations to ontologies: a paradigm shift in health informatics?
Healthc Inform Res. 2013; 19(4):235-242 Doi: 10.4258/hir.2013.19.4.235 [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG

 

2012

Full paper/article (Journal)

** Andrade, AQ; Blondé, W; Hastings, J; Schulz, S Process attributes in bio-ontologies.
BMC Bioinformatics. 2012; 13(6):217-217 Doi: 10.1186/1471-2105-13-217 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Andrade, AQ; Kreuzthaler, M; Hastings, J; Krestyaninova, M; Schulz, S Requirements for semantic biobanks.
Stud Health Technol Inform. 2012; 180(12):569-573
PubMed

 

** Balke, WT; Handels, H; Kalet, I; Kimura, M; Kulikowski, CA; Moura, LA; Pommert, A; Schulz, S Discussion of "spatial-symbolic query engine in anatomy".
Methods Inf Med. 2012; 51(6): 479-488. Doi: 10.1055/s-0038-1627051
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** Kreuzthaler, M; Schulz, S Metonymies in medical terminologies. A SNOMED CT case study.
AMIA Annu Symp Proc. 2012; 2012(6):463-467 [OPEN ACCESS]
PubMed PUBMED Central FullText

 

** López-García, P; Boeker, M; Illarramendi, A; Schulz, S Usability-driven pruning of large ontologies: the case of SNOMED CT.
J Am Med Inform Assoc. 2012; 19(e1):e102-e109 Doi: 10.1136/amiajnl-2011-000503 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Rector, A; Rodrigues, JM; Spackman, K Competing interpretations of disorder codes in SNOMED CT and ICD.
AMIA Annu Symp Proc. 2012; 2012(3):819-827 [OPEN ACCESS]
PubMed PUBMED Central FullText

 

** Seddig-Raufie, D; Jansen, L; Schober, D; Boeker, M; Grewe, N; Schulz, S Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology.
J Biomed Semantics. 2012; 3 Suppl 2(4):S2-S2 Doi: 10.1186/2041-1480-3-S2-S2 [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG

 

Review

** Hastings, J; Schulz, S Ontologies for human behavior analysis and their application to clinical data.
Int Rev Neurobiol. 2012; 103(4):89-107 Doi: 10.1016/B978-0-12-388408-4.00005-8
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2011

Full paper/article (Journal)

** Boeker, M; Tudose, I; Hastings, J; Schober, D; Schulz, S Unintended consequences of existential quantifications in biomedical ontologies.
BMC BIOINFORMATICS. 2011; 12(e1): 456-456. Doi: 10.1186/1471-2105-12-456 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Herre, H; Hoehndorf, R; Kelso, J; Loebe, F; Schulz, S OBML - Ontologies in Biomedicine and Life Sciences.
J Biomed Semantics. 2011; 2 Suppl 4(2):I1-I1 Doi: 10.1186/2041-1480-2-S4-I1 [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG

 

** Jansen, L; Schulz, S Grains, components and mixtures in biomedical ontologies.
J Biomed Semantics. 2011; 2 Suppl 4(2):S2-S2 Doi: 10.1186/2041-1480-2-S4-S2 [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG

 

** Kreuzthaler, M; Schulz, S Truecasing clinical narratives.
Stud Health Technol Inform. 2011; 169: 589-593.
PubMed

 

** Santana, F; Schober, D; Medeiros, Z; Freitas, F; Schulz, S Ontology patterns for tabular representations of biomedical knowledge on neglected tropical diseases.
BIOINFORMATICS. 2011; 27(13): i349-i356. Doi: 10.1093/bioinformatics/btr226 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Cornet, R; Spackman, K Consolidating SNOMED CT’s ontological commitment.
Applied ontology. 2011; 6: 1-11. Doi: 10.3233/AO-2011-0084
Web of Science FullText FullText_MUG

 

** Schulz, S; Seddig, T; Hanser, S; Zaiß, A; Daumke, P Checking Coding Completeness by Mining Discharge Summaries.
Stud Health Technol Inform. 2011; 169: 594-598.
PubMed

 

** Schulz, S; Spackman, K; James, A; Cocos, C; Boeker, M Scalable representations of diseases in biomedical ontologies.
J Biomed Semantics. 2011; 2 Suppl 2(2):S6-S6 Doi: 10.1186/2041-1480-2-S2-S6 [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG

 

Comment

** Brochhausen, M; Burgun, A; Ceusters, W; Hasman, A; Leong, TY; Musen, M; Oliveira, JL; Peleg, M; Rector, A; Schulz, S Discussion of "biomedical ontologies: toward scientific debate".
Methods Inf Med. 2011; 50(3):217-236 Doi: 10.1055/s-0038-1625243 [OPEN ACCESS]
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2010

Full paper/article (Journal)

** Daumke, P; Schulz, S; Muller, ML; Dzeyk, W; Prinzen, L; Pacheco, EJ; Cancian, PS; Nohama, P; Marko, K Subword-based semantic retrieval of clinical and bibliographic documents.
METHODS INFORM MED. 2010; 49(2): 141-147. Doi: 10.3414/ME9303
Web of Science PubMed FullText FullText_MUG Google Scholar

 

** Oleynik, M; Nohama, P; Cancian, PS; Schulz, S Performance analysis of a POS tagger applied to discharge summaries in Portuguese.
Stud Health Technol Inform. 2010; 160(Pt 2):959-963
PubMed FullText

 

** Ouagne, D; Nadah, N; Schober, D; Choquet, R; Teodoro, D; Colaert, D; Schulz, S; Jaulent, MC; Daniel, C Ensuring HL7-based information model requirements within an ontology framework.
Stud Health Technol Inform. 2010; 160(Pt 2):912-916
PubMed

 

** Schober, D; Boeker, M; Bullenkamp, J; Huszka, C; Depraetere, K; Teodoro, D; Nadah, N; Choquet, R; Daniel, C; Schulz, S The DebugIT core ontology: semantic integration of antibiotics resistance patterns.
Stud Health Technol Inform. 2010; 160(Pt 2):1060-1064
PubMed

 

** Schulz, S; Schober, D; Daniel, C; Jaulent, MC Bridging the semantics gap between terminologies, ontologies, and information models.
Stud Health Technol Inform. 2010; 160(Pt 2):1000-1004
PubMed

 

** Schulz, S; Schober, D; Tudose, I; Stenzhorn, H The Pitfalls of Thesaurus Ontologization - the Case of the NCI Thesaurus.
AMIA Annu Symp Proc. 2010; 2010(18):727-731 [OPEN ACCESS]
PubMed PUBMED Central

 

2009

Full paper/article (Journal)

** Blobel, B; Chronaki, C; Stegwee, R; Grain, H; Hammond, WE; Jaffe, C; Kalra, D; Koehn, M; Macary, F; Sabutsch, S; Sheetham, E; Schulz, S; Tan, M; HL7 Affiliates Council HL7's comprehensive standards set and its international collaboration for enabling semantically interoperable eHealth and pHealth solutions.
Stud Health Technol Inform. 2009; 150:982-986
PubMed

 

** Blobel, B; Kalra, D; Koehn, M; Lunn, K; Pharow, P; Ruotsalainen, P; Schulz, S; Smith, B The role of ontologies for sustainable, semantically interoperable and trustworthy EHR solutions.
Stud Health Technol Inform. 2009; 150:953-957 [OPEN ACCESS]
PubMed PUBMED Central

 

** Cornet, R; Schulz, S Relationship groups in SNOMED CT.
Stud Health Technol Inform. 2009; 150:223-227
PubMed

 

** Hanser, S; Zaiss, A; Schulz, S Health care procedures.
METHODS INFORM MED. 2009; 48(6): 540-545. Doi: 10.3414/ME09-01-0007 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** Marwede, D; Daumke, P; Marko, K; Lobsien, D; Schulz, S; Kahn, T RadLex - German version: a radiological lexicon for indexing image and report information.
Rofo. 2009; 181(1):38-44 Doi: 10.1055/s-2008-1027895 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** Pacheco, E; Stenzhorn, H; Nohama, P; Paetzold, J; Schulz, S Detecting Underspecification in SNOMED CT concept definitions through natural language processing.
AMIA Annu Symp Proc. 2009; 2009(1):492-496 [OPEN ACCESS]
PubMed PUBMED Central

 

** Schulz, S; Beisswanger, E; van, den, Hoek, L; Bodenreider, O; van, Mulligen, EM Alignment of the UMLS semantic network with BioTop: methodology and assessment.
Bioinformatics. 2009; 25(12): i69-76. Doi: 10.1093/bioinformatics/btp194 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Boeker, M; Stenzhorn, H; Niggemann, J Granularity issues in the alignment of upper ontologies.
Methods Inf Med. 2009; 48(2):184-189 Doi: 10.3414/ME9221 [OPEN ACCESS]
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** Schulz, S; Karlsson, D; Daniel, C; Cools, H; Lovis, C Is the "International Classification for Patient Safety" a classification?
Stud Health Technol Inform. 2009; 150: 502-6.
PubMed

 

** Schulz, S; Stenzhorn, H; Boeker, M; Smith, B Strengths and limitations of formal ontologies in the biomedical domain.
Rev Electron Comun Inf Inov Saude. 2009; 3(1):31-45 Doi: 10.3395/reciis.v3i1.241en [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG Google Scholar

 

** Schulz, S; Suntisrivaraporn, B; Baader, F; Boeker, M SNOMED reaching its adolescence: ontologists' and logicians' health check.
Int J Med Inform. 2009; 78 Suppl 1(1):S86-S94 Doi: 10.1016/j.ijmedinf.2008.06.004
PubMed FullText FullText_MUG Google Scholar

 

** Stenzhorn, H; Pacheco, EJ; Nohama, P; Schulz, S Automatic mapping of clinical documentation to SNOMED CT.
Stud Health Technol Inform. 2009; 150: 228-232. [OPEN ACCESS]
PubMed FullText

 

Editorial

** Hasman, A; Andersen, SK; Klein, GO; Schulz, S; Aarts, J; Mazzoleni, MC MIE 2008: eHealth beyond the horizon--get IT there.
Methods Inf Med. 2009; 48(2):135-136 Doi: 10.1055/s-0038-1625236
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2008

Full paper/article (Journal)

** Beisswanger, E; Lee, V; Kim, JJ; Rebholz-Schuhmann, D; Splendiani, A; Dameron, O; Schulz, S; Hahn, U Gene Regulation Ontology (GRO): design principles and use cases.
Stud Health Technol Inform. 2008; 136:9-14
PubMed Google Scholar

 

** Boeker, M; Stenzhorn, H; Schulz, S Applying a biomedical top-level ontology to encode biological taxa.
AMIA Annu Symp Proc. 2008; 3(1):882-882
PubMed

 

** Hofmann-Apitius, M; Fluck, J; Furlong, L; Fornes, O; Kolarik, C; Hanser, S; Boeker, M; Schulz, S; Sanz, F; Klinger, R; Mevissen, T; Gattermayer, T; Oliva, B; Friedrich, CM Knowledge environments representing molecular entities for the virtual physiological human.
Philos Transact A Math Phys Eng Sci. 2008; 366(1878):3091-3110 Doi: 10.1098/rsta.2008.0099 [OPEN ACCESS]
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** Niggemann, JM; Gebert, A; Schulz, S Modeling functional neuroanatomy for an anatomy information system.
J Am Med Inform Assoc. 2008; 15(5):671-678 Doi: 10.1197/jamia.M2358 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Boeker, M; Stenzhorn, H How granularity issues concern biomedical ontology integration.
Stud Health Technol Inform. 2008; 136(1878):863-868
PubMed

 

** Schulz, S; Daumke, P; Fischer, P; Müller, M; Müller, ML Evaluation of a document search engine in a clinical department system.
AMIA Annu Symp Proc. 2008; 181(1):647-651 [OPEN ACCESS]
PubMed PUBMED Central

 

** Schulz, S; Klein, GO SNOMED CT - advances in concept mapping, retrieval, and ontological foundations. Selected contributions to the Semantic Mining Conference on SNOMED CT (SMCS 2006).
BMC Med Inform Decis Mak. 2008; 8 Suppl 1(2):S1-S1 Doi: 10.1186/1472-6947-8-S1-S1 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Stenzhorn, H; Boeker, M The ontology of biological taxa.
Bioinformatics. 2008; 24(13):i313-i321 Doi: 10.1093/bioinformatics/btn158 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Stenzhorn, H; Schulz, S; Boeker, M; Smith, B Adapting Clinical Ontologies in Real-World Environments.
J Univers. Comput Sci. 2008; 14(22):3767-3780 Doi: 10.3217/jucs-014-22-3767 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

Short report/Letter

** Schulz, S; Marko, K; Suntisrivaraporn, B Formal representation of complex SNOMED CT expressions
BMC MED INFORM DECIS MAK. 2008; 8: Doi: 10.1186/1472-6947-8-S1-S9 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

Abstract (Journal)

** Weissenberger, C; Jonassen, S; Schultze-Seemann, W; Schulz, S; Matar, H; Fischer, C; Fogel, J Cultural differences among prostate cancer websites written in English, German, Hebrew or Arabic
INT J RADIAT ONCOL BIOL PHYS. 2008; 72(1):S502-S503.-50th Annual Meeting of the American-Society-for-Therapeutic-Radiology-and Oncology; SEP 21-25, 2008; Boston, MA. Doi: 10.1016/j.ijrobp.2008.06.1467 [Oral Communication]
Web of Science FullText FullText_MUG

 

2007

Full paper/article (Journal)

** Andrade, RL; Pacheco, E; Cancian, PS; Nohama, P; Schulz, S Corpus-based error detection in a multilingual medical thesaurus.
Stud Health Technol Inform. 2007; 129(Pt 1): 529-534.
PubMed FullText

 

** Bitencourt, JL; Cancian, PS; Pacheco, EJ; Nohama, P; Schulz, S Thesaurus anomaly detection by user action monitoring.
Stud Health Technol Inform. 2007; 129(Pt 1): 655-659.
PubMed FullText

 

** Boeker, M; Stenzhorn, H; Kumpf, K; Bijlenga, P; Schulz, S; Hanser, S The @neurIST ontology of intracranial aneurysms: providing terminological services for an integrated IT infrastructure.
AMIA Annu Symp Proc. 2007; 78 Suppl 1(1):56-60 [OPEN ACCESS]
PubMed PUBMED Central

 

** Daumke, P; Marku, K; Poprat, M; Schulz, S; Klar, R Biomedical information retrieval across languages.
Med Inform Internet Med. 2007; 32(2):131-147 Doi: 10.1080/14639230701197587
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** Markó, K; Daumke, P; Schulz, S; Klar, R; Hahn, U Large-scale evaluation of a medical cross-language information retrieval system.
Stud Health Technol Inform. 2007; 129(Pt 1):392-396
PubMed Google Scholar

 

** Schulz, S; Hahn, U Towards the ontological foundations of symbolic biological theories.
Artif Intell Med. 2007; 39(3):237-250 Doi: 10.1016/j.artmed.2006.12.001
Web of Science PubMed FullText FullText_MUG Google Scholar

 

** Schulz, S; Johansson, I Continua in biological systems
MONIST. 2007; 90(4): 499-522. Doi: 10.5840/monist200790434 [OPEN ACCESS]
Web of Science FullText FullText_MUG Google Scholar

 

** Schulz, S; Marko, K; Hahn, U Spatial location and its relevance for terminological inferences in bio-ontologies
BMC BIOINFORMATICS. 2007; 8: Doi: 10.1186/1471-2105-8-134 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG Google Scholar

 

** Schulz, S; Stenzhorn, H Ten theses on clinical ontologies.
Stud Health Technol Inform. 2007; 127(Pt 2):268-275
PubMed

 

** Schulz, S; Suntisrivaraporn, B; Baader, F SNOMED CT's problem list: ontologists' and logicians' therapy suggestions.
Stud Health Technol Inform. 2007; 129(Pt 1):802-806
PubMed Google Scholar

 

** Stenzhorn, H; Beisswanger, E; Schulz, S Towards a top-domain ontology for linking biomedical ontologies.
Stud Health Technol Inform. 2007; 129(Pt 2):1225-1229
PubMed

 

Editorial

** Hahn, U; Schulz, S Ontological foundations for biomedical sciences.
Artif Intell Med. 2007; 39(3):179-182 Doi: 10.1016/j.artmed.2006.12.006
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2006

Full paper/article (Journal)

** Hanser, S; Zaiss, A; Schulz, S Comparison of ICHI and CCAM basic coding system.
Stud Health Technol Inform. 2006; 124(6):795-800
PubMed

 

** Marko, K; Baud, R; Zweigenbaum, P; Borin, L; Merkel, M; Schulz, S Towards a multilingual medical lexicon.
AMIA Annu Symp Proc. 2006; 8(Pt 1):534-538 [OPEN ACCESS]
PubMed PUBMED Central

 

** Marko, K; Schulz, S; Hahn, U Automatic lexeme acquisition for a multilingual medical subword thesaurus.
Int J Med Inform. 2006; 76(2-3):184-189 Doi: 10.1016/j.ijmedinf.2006.05.032
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** Schulz, S; Beisswanger, E; Wermter, J; Hahn, U Towards an upper level ontology for molecular biology.
AMIA Annu Symp Proc. 2006; 39(3):694-698 [OPEN ACCESS]
PubMed PUBMED Central

 

** Schulz, S; Hanser, S; Hahn, U; Rogers, J The semantics of procedures and diseases in SNOMED CT.
METHODS INFORM MED. 2006; 45(4): 354-358. Doi: 10.1055/s-0038-1634088 [OPEN ACCESS]
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** Schulz, S; Kumar, A; Bittner, T Biomedical ontologies: what part-of is and isn't.
J BIOMED INFORM. 2006; 39(3): 350-361. Doi: 10.1016/j.jbi.2005.11.003 [OPEN ACCESS]
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** Weissenberger, C; Muller, D; Beranek-Chiu, J; Neumann, M; Jonassen, S; Bartelt, S; Schulz, S; Witucki, G; Henne, K; Geissler, M; Fogel, J Gastrointestinal cancer web sites: how do they address patients' concerns?
Int J Colorectal Dis. 2006; 21(7):615-624 Doi: 10.1007/s00384-005-0046-9
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2005

Full paper/article (Journal)

** Daumke, P; Markó, K; Poprat, M; Schulz, S Multilingual biomedical dictionary.
AMIA Annu Symp Proc. 2005; 32(2):933-933 [OPEN ACCESS]
PubMed PUBMED Central

 

** Daumke, P; Schulz, S; Markó, K A CLIR Interface to a Web search engine.
AMIA Annu Symp Proc. 2005; 76(2-3):934-934 [OPEN ACCESS]
PubMed PUBMED Central

 

** Marko, K; Schulz, S; Hahn, U MorphoSaurus--design and evaluation of an interlingua-based, cross-language document retrieval engine for the medical domain.
Methods Inf Med. 2005; 44(4):537-545 Doi: 10.1055/s-0038-1634005 [OPEN ACCESS]
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** Markó, K; Schulz, S; Hahn, U Automatic lexicon acquisition for a medical cross-language information retrieval system.
Stud Health Technol Inform. 2005; 116(3): 829-834.
PubMed

 

** Schulz, S; Daumke, P; Smith, B; Hahn, U How to distinguish parthood from location in bioontologies.
AMIA Annu Symp Proc. 2005; 14(22):669-673 [OPEN ACCESS]
PubMed PUBMED Central

 

** Schulz, S; Hahn, U Part-whole representation and reasoning in formal biomedical ontologies.
Artif Intell Med. 2005; 34(3):179-200 Doi: 10.1016/j.artmed.2004.11.005
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** Schulz, S; Hahn, U; Rogers, J Semantic Clarification of the Representation of Procedures and Diseases in SNOMED((R))CT.
Stud Health Technol Inform. 2005; 116(3):773-778
PubMed Google Scholar

 

Full paper/article (Proceedings)

** Hahn, U; Daumke, P; Schulz, S; Marko, K Cross-language mining for acronyms and their completions from the web
In: Carbonell, JG, Motoda, H, Hoffmann, A. editors(s). DISCOVERY SCIENCE, PROCEEDINGS; LECTURE NOTES IN COMPUTER SCIENCE3735: 113-123. (ISBN: 3-540-29230-6) Doi: 10.1007/11563983_11
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2004

Full paper/article (Journal)

** Schulz, S; Hahn, U A description logics approach to CGPS.
Stud Health Technol Inform. 2004; 101(3):137-141
PubMed

 

** Weissenberger, C; Jonassen, S; Beranek-Chiu, J; Neumann, M; Muller, D; Bartelt, S; Schulz, S; Monting, JS; Henne, K; Gitsch, G; Witucki, G Breast cancer: patient information needs reflected in English and German web sites.
Br J Cancer. 2004; 91(8):1482-1487 Doi: 10.1038/sj.bjc.6602168 [OPEN ACCESS]
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2003

Full paper/article (Journal)

** Beck, R; Schulz, S Logic-based remodeling of the Digital Anatomist Foundational Model.
AMIA Annu Symp Proc. 2003; 71-5 [OPEN ACCESS]
PubMed PUBMED Central

 

** Ceusters, W; Desimpel, I; Smith, B; Schulz, S Using cross-lingual information to cope with underspecification in formal ontologies.
Stud Health Technol Inform. 2003; 95(22):391-396
PubMed

 

** Hahn, U; Schulz, S Towards a broad-coverage biomedical ontology based on description logics.
Pac Symp Biocomput. 2003; 90(3):577-588 [OPEN ACCESS]
PubMed Google Scholar

 

** Markó, K; Daumke, P; Schulz, S; Hahn, U Cross-language MeSH indexing using morpho-semantic normalization.
AMIA Annu Symp Proc. 2003; 90(3):425-429 [OPEN ACCESS]
PubMed PUBMED Central Google Scholar

 

2002

Full paper/article (Journal)

** Hahn, U; Romacker, M; Schulz, S Creating knowledge repositories from biomedical reports: the MEDSYNDIKATE text mining system.
Pac Symp Biocomput. 2002; 67(1-3):338-349 [OPEN ACCESS]
PubMed Google Scholar

 

** Hahn, U; Romacker, M; Schulz, S MEDSYNDIKATE--a natural language system for the extraction of medical information from findings reports.
Int J Med Inform. 2002; 67(1-3):63-74 Doi: 10.1016/S1386-5056(02)00053-9
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** Honeck, M; Hahn, U; Klar, R; Schulz, S Text retrieval based on medical subwords.
Stud Health Technol Inform. 2002; 90(2):241-245
PubMed

 

** Pschichholz, H; Boeker, M; Gaudes, R; Schulz, S; Klar, R InfoServerPlus: providing a medical library as application service.
Stud Health Technol Inform. 2002; 90(22):189-194
PubMed

 

** Schulz, S; Hahn, U A knowledge representation view on biomedical structure and function.
Proc AMIA Symp. 2002; 90(3):687-691 [OPEN ACCESS]
PubMed PUBMED Central Google Scholar

 

** Weske-Heck, G; Zaiss, A; Zabel, M; Schulz, S; Giere, W; Schopen, M; Klar, R The German specialist lexicon.
Proc AMIA Symp. 2002; 90(2):884-888 [OPEN ACCESS]
PubMed PUBMED Central Google Scholar

 

Full paper/article (Proceedings)

** Hahn, U; Schulz, S Turning lead into gold? Feeding a formal knowledge base with informal conceptual knowledge
In: GomezPerez, A, Benjamins, VR. editors(s). KNOWLEDGE ENGINEERING AND KNOWLEDGE MANAGEMENT, PROCEEDINGS - ONTOLOGIES AND THE SEMANTIC WEB; LECTURE NOTES IN ARTIFICIAL INTELLIGENCE2473: 182-196. (ISBN: 3-540-44268-5) Doi: 10.1007/3-540-45810-7_19
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2001

Full paper/article (Journal)

** Klar, R; Schlachter, S; Schulz, S Health informatics world wide--a WWW service for the health informatics community.
Stud Health Technol Inform. 2001; 84(Pt 1):357-360
PubMed

 

** Schulz, S; Hahn, U Medical knowledge reengineering--converting major portions of the UMLS into a terminological knowledge base.
Int J Med Inform. 2001; 64(2-3):207-221 Doi: 10.1016/S1386-5056(01)00201-5
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** Schulz, S; Honeck, M; Hahn, U Indexing medical WWW documents by morphemes.
Stud Health Technol Inform. 2001; 84(Pt 1):266-270
PubMed

 

** Schulz, S; Klar, R Virtual conferences in medicine.
Zentralbl Gynakol. 2001; 123(8):487-493 Doi: 10.1055/s-2001-17251
Web of Science PubMed FullText FullText_MUG

 

Full paper/article (Proceedings)

** Hahn, U; Honeck, M; Piotrowski, M; Schulz, S Subword segmentation - Leveling out morphological variations for medical document retrieval
J AMER MED INFORM ASSOC. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION; 229-233. ( Presented at: Annual Symposium of the American-Medical-Informatics-Association (AMIA 2001), WASHINGTON, D.C., NOV 03-07, 2001) [OPEN ACCESS]
Web of Science PubMed PUBMED Central

 

** Schulz, S Bidirectional mereological reasoning in anatomical knowledge bases
J AMER MED INFORM ASSOC. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION; 607-611. ( Presented at: Annual Symposium of the American-Medical-Informatics-Association (AMIA 2001), WASHINGTON, D.C., NOV 03-07, 2001) [OPEN ACCESS]
Web of Science PubMed PUBMED Central Google Scholar

 

** Schulz, S; Hahn, U Parts, locations, and holes - Formal reasoning about anatomical structures
In: Quaglini, S, Barahona, P, Andreassen, S. editors(s). ARTIFICIAL INTELLIGENCE IN MEDICINE, PROCEEDINGS; LECTURE NOTES IN ARTIFICIAL INTELLIGENCE2101: 293-303. (ISBN: 3-540-42294-3) Doi: 10.1007/3-540-48229-6_41
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2000

Full paper/article (Journal)

** Romacker, M; Hahn, U; Schulz, S; Klar, R Semantic analysis of medical free texts.
Stud Health Technol Inform. 2000; 77(8):438-442
PubMed

 

** Schulz, S; Hahn, U Morpheme-based, cross-lingual indexing for medical document retrieval.
Int J Med Inform. 2000; 58-59(Pt 1):87-99 Doi: 10.1016/S1386-5056(00)00078-2
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** Schulz, S; Romacker, M; Hahn, U Knowledge engineering the UMLS.
Stud Health Technol Inform. 2000; 77(Pt 1):701-705
PubMed

 

Full paper/article (Proceedings)

** Franz, P; Zaiss, A; Schulz, S; Hahn, U; Klar, R Automated coding of diagnoses - Three methods compared
J AMER MED INFORM ASSOC. 2000; 250-254. [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText

 

** Hahn, U; Romacker, M; Schulz, S MEDSYNDIKATE - Design considerations for an ontology-based medical text understanding system
J AMER MED INFORM ASSOC. 2000; 330-334. [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText

 

** Hahn, U; Schulz, S Towards very large terminological knowledge bases: A case study from medicine
In: Hamilton, HJ. editors(s). ADVANCES IN ARTIFICIAL INTELLIGENCE, PROCEEDINGS; LECTURE NOTES IN ARTIFICIAL INTELLIGENCE1822: 176-186. (ISBN: 3-540-67557-4) Doi: 10.1007/3-540-45486-1_15
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** Schulz, S; Hahn, U; Romacker, M Modeling anatomical spatial relations with description logics
J AMER MED INFORM ASSOC. 2000; 779-783. [OPEN ACCESS]
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1999

Full paper/article (Journal)

** Hahn, U; Romacker, M; Schulz, S Discourse structures in medical reports--watch out! The generation of referentially coherent and valid text knowledge bases in the MEDSYNDIKATE system.
Int J Med Inform. 1999; 53(1):1-28 Doi: 10.1016/S1386-5056(98)00091-4
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** Hahn, U; Schulz, S; Romacker, M Part-whole reasoning: A case study in medical ontology engineering
IEEE INTELL SYST APPL. 1999; 14(5): 59-67. Doi: 10.1109/5254.796091
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** Schulz, S; Romacker, M; Franz, P; Zaiss, A; Klar, R; Hahn, U Towards a multilingual morpheme thesaurus for medical free-text retrieval.
Stud Health Technol Inform. 1999; 68(8):891-894
PubMed Google Scholar

 

Review

** Hahn, U; Romacker, M; Schulz, S How knowledge drives understanding--matching medical ontologies with the needs of medical language processing.
Artif Intell Med. 1999; 15(1):25-51 Doi: 10.1016/S0933-3657(98)00044-X
Web of Science PubMed FullText FullText_MUG Google Scholar

 

Abstract (Journal)

** Schulz, S; Faggioli, G; Romacker, M; Hahn, U Automatic import and manual refinement of medical knowledge
J AMER MED INFORM ASSOC. 1999; 1156-1156.
Web of Science

 

Full paper/article (Proceedings)

** Romacker, M; Schulz, S; Hahn, U Small is beautiful - Compact semantics for medical language processing
In: Horn, W, Shahar, Y, Lindberg, G, Andreassen, S, Wyatt, J. editors(s). ARTIFICIAL INTELLIGENCE IN MEDICINE; LECTURE NOTES IN ARTIFICIAL INTELLIGENCE1620: 400-410. (ISBN: 3-540-66162-X) Doi: 10.1007/3-540-48720-4_44
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** Romacker, M; Schulz, S; Hahn, U Streamlining semantic interpretation for medical narratives
J AMER MED INFORM ASSOC. 1999; 925-929. [OPEN ACCESS]
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1998

Full paper/article (Journal)

** Hahn, U; Romacker, M; Schulz, S Why discourse structures in medical reports matter for the validity of automatically generated text knowledge bases.
Stud Health Technol Inform. 1998; 52 Pt 1(Pt 1):633-638
PubMed Google Scholar

 

** Schulz, S; Auhuber, T; Schrader, U; Klar, R Quality criteria for electronic publications in medicine.
Stud Health Technol Inform. 1998; 51:217-226
PubMed

 

** Schulz, S; Romacker, M; Hahn, U Part-whole reasoning in medical ontologies revisited - Introducing SEP triplets into classification-based description logics
J AMER MED INFORM ASSOC. 1998; 830-834. [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText

 

** Schulz, S; Zaiss, A; Brunner, R; Spinner, D; Klar, R Conversion problems concerning automated mapping from ICD-10 to ICD-9.
Methods Inf Med. 1998; 37(3):254-259 Doi: 10.1055/s-0038-1634529
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Full paper/article (Proceedings)

** Schulz, S; Romacker, M; Hahn, U Part-whole reasoning in medical knowledge bases using description logics
LECT NOTE ARTIF INTELL. 1998; 1504: 237-248. Doi: 10.1007/BFb0095443
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1997

Full paper/article (Journal)

** Schulz, S; Schrader, U; Klar, R Computer-based training and electronic publishing in the health sector: tools and trends.
METHODS INFORM MED. 1997; 36(2): 149-153. Doi: 10.1055/s-0038-1634692 [OPEN ACCESS]
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1992

Full paper/article (Journal)

** KROEGER, A; SCHULZ, S; WITTE, B; SKEWESRAMM, R; ETZLER, A Helminthiasis and cultural change in the Peruvian rainforest.
J Trop Med Hyg. 1992; 95(2):104-113
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** SCHULZ, S; KROEGER, A Soil contamination with Ascaris lumbricoides eggs as an indicator of environmental hygiene in urban areas of north-east Brazil.
J Trop Med Hyg. 1992; 95(2):95-103
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