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Al-Zoughbi Wael |

Publications

** = Publications listed in SCI/SSCI/Pubmed

2025

Full paper/article (Journal)

** Kraisnikovic, C; Harb, R; Plass, M; Al Zoughbi, W; Holzinger, A; Müller, H Fine-tuning language model embeddings to reveal domain knowledge: An explainable artificial intelligence perspective on medical decision making
ENG APPL ARTIF INTEL. 2025; 139: 109561 Doi: 10.1016/j.engappai.2024.109561
Web of Science FullText FullText_MUG

2022

Full paper/article (Journal)

** Cyrta, J; Rosiene, J; Bareja, R; Kudman, S; Al, Zoughbi, W; Motanagh, S; Wilkes, DC; Eng, K; Zhang, T; Sticca, E; Mathew, S; Rubin, MA; Sboner, A; Elemento, O; Rubin, BP; Imielinski, M; Mosquera, JM Whole-genome characterization of myoepithelial carcinomas of the soft tissue.
Cold Spring Harb Mol Case Stud. 2022; 8(7): Doi: 10.1101/mcs.a006227 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

Case Report

** Alnajar, H; Ravichandran, H; Figueiredo, Rendeiro, A; Ohara, K; Al, Zoughbi, W; Manohar, J; Greco, N; Sigouros, M; Fox, J; Muth, E; Angiuoli, S; Faltas, B; Shusterman, M; Sternberg, CN; Elemento, O; Mosquera, JM Tumor-immune microenvironment revealed by Imaging Mass Cytometry in a metastatic sarcomatoid urothelial carcinoma with a prolonged response to pembrolizumab.
Cold Spring Harb Mol Case Stud. 2022; 8(3): Doi: 10.1101/mcs.a006151 (- Case Report) [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

2021

Full paper/article (Journal)

** Al, Zoughbi, W; Fox, J; Beg, S; Papp, E; Hissong, E; Ohara, K; Keefer, L; Sigouros, M; Kane, T; Bockelman, D; Nichol, D; Patchell, E; Bareja, R; Karandikar, A; Alnajar, H; Cerqueira, G; Guthrie, VB; Verner, E; Manohar, J; Greco, N; Wilkes, D; Tagawa, S; Malbari, MS; Holcomb, K; Eng, KW; Shah, M; Altorki, NK; Sboner, A; Nanus, D; Faltas, B; Sternberg, CN; Simmons, J; Houvras, Y; Molina, AM; Angiuoli, S; Elemento, O; Mosquera, JM Validation of a Circulating Tumor DNA-Based Next-Generation Sequencing Assay in a Cohort of Patients with Solid tumors: A Proposed Solution for Decentralized Plasma Testing.
Oncologist. 2021; 26(11): e1971-e1981. Doi: 10.1002/onco.13905 [OPEN ACCESS]
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** Al, Zoughbi, W; Kim, D; Alperstein, SA; Ohara, K; Manohar, J; Greco, N; Khani, F; Robinson, BD; Rao, RA; Elemento, O; Mosquera, JM; Siddiqui, MT Incorporating cytologic adequacy assessment into precision oncology workflow using telepathology: An institutional experience.
Cancer Cytopathol. 2021; 129(11): 874-883. Doi: 10.1002/cncy.22441
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** Beg, S; Bareja, R; Ohara, K; Eng, KW; Wilkes, DC; Pisapia, DJ; Zoughbi, WA; Kudman, S; Zhang, W; Rao, R; Manohar, J; Kane, T; Sigouros, M; Xiang, JZ; Khani, F; Robinson, BD; Faltas, BM; Sternberg, CN; Sboner, A; Beltran, H; Elemento, O; Mosquera, JM Integration of whole-exome and anchored PCR-based next generation sequencing significantly increases detection of actionable alterations in precision oncology.
Transl Oncol. 2021; 14(1): 100944 Doi: 10.1016/j.tranon.2020.100944 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

2020

Review

** Al-Zoughbi, W; Hoefler, G Tumor Macroenvironment: An Update.
Pathobiology. 2020; 87(2):58-60 Doi: 10.1159/000502097 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

2019

Full paper/article (Journal)

** Hofer, DC; Zirkovits, G; Pelzmann, HJ; Huber, K; Pessentheiner, AR; Xia, W; Uno, K; Miyazaki, T; Kon, K; Tsuneki, H; Pendl, T; Al Zoughbi, W; Madreiter-Sokolowski, CT; Trausinger, G; Abdellatif, M; Schoiswohl, G; Schreiber, R; Eisenberg, T; Magnes, C; Sedej, S; Eckhardt, M; Sasahara, M; Sasaoka, T; Nitta, A; Hoefler, G; Graier, WF; Kratky, D; Auwerx, J; Bogner-Strauss, JG N-acetylaspartate availability is essential for juvenile survival on fat-free diet and determines metabolic health.
FASEB J. 2019; 33(12):13808-13824 Doi: 10.1096/fj.201801323R [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

2018

Full paper/article (Journal)

** Alkan, HF; Walter, KE; Luengo, A; Madreiter-Sokolowski, CT; Stryeck, S; Lau, AN; Al-Zoughbi, W; Lewis, CA; Thomas, CJ; Hoefler, G; Graier, WF; Madl, T; Vander Heiden, MG; Bogner-Strauss, JG Cytosolic Aspartate Availability Determines Cell Survival When Glutamine Is Limiting.
Cell Metab. 2018; 28(5):706-720 Doi: 10.1016/j.cmet.2018.07.021 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

** Al-Zoughbi, W; Schauer, S; Pichler, M; Hoefler, G Early Loss of Forkhead Transcription Factor, O Subgroup, Member 1 Protein in the Development of Pancreatic Ductal Adenocarcinoma.
Pathobiology. 2018; 85(5-6): 342-347. Doi: 10.1159/000492433 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

2017

Full paper/article (Journal)

** Edlinger, L; Berger-Becvar, A; Menzl, I; Hoermann, G; Greiner, G; Grundschober, E; Bago-Horvath, Z; Al-Zoughbi, W; Hoefler, G; Brostjan, C; Gille, L; Moriggl, R; Spittler, A; Sexl, V; Hoelbl-Kovacic, A Expansion of BCR/ABL1⁺ cells requires PAK2 but not PAK1.
Br J Haematol. 2017; 179(2):229-241 Doi: 10.1111/bjh.14833 [OPEN ACCESS]
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** Kaineder, K; Birngruber, T; Rauter, G; Obermüller, B; Eichler, J; Münzker, J; Al-Zoughbi, W; Mautner, SI; Torekov, SS; Hartmann, B; Kotzbeck, P; Pieber, TR Chronic intrahypothalamic rather than subcutaneous liraglutide treatment reduces body weight gain and stimulates the melanocortin receptor system.
Int J Obes (Lond). 2017; 41(8):1263-1270 Doi: 10.1038/ijo.2017.98 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

2016

Full paper/article (Journal)

** Al-Zoughbi, W; Pichler, M; Gorkiewicz, G; Guertl-Lackner, B; Haybaeck, J; Jahn, SW; Lackner, C; Liegl-Atzwanger, B; Popper, H; Schauer, S; Nusshold, E; Kindt, AS; Trajanoski, Z; Speicher, MR; Haemmerle, G; Zimmermann, R; Zechner, R; Vesely, PW; Hoefler, G Loss of adipose triglyceride lipase is associated with human cancer and induces mouse pulmonary neoplasia.
Oncotarget. 2016; 7(23):33832-33840 Doi: 10.18632/oncotarget.9418 [OPEN ACCESS]
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2015

Abstract (Journal)

** Vinod, M; Patankar, JV; Sachdev, V; Al-Zoughbi, WAEL; Hofler, G; Frank, SASA; Graier, WF; Kratky, D; Kostner, GM MICRO-RNA 206 AFFECTS GLUCOSE INDUCED INSULIN SECRETION UNDER HIGH-FAT DIET
ATHEROSCLEROSIS. 2015; 241(1):E83-E83.-83rd Congress of the European-Atherosclerosis-Society (EAS); MAR 22-25, 2015; Glasgow, SCOTLAND. Doi: 10.1016/j.atherosclerosis.2015.04.292 [Poster]
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2014

Full paper/article (Journal)

** Schrammel, A; Mussbacher, M; Wölkart, G; Stessel, H; Pail, K; Winkler, S; Schweiger, M; Haemmerle, G; Al Zoughbi, W; Höfler, G; Lametschwandtner, A; Zechner, R; Mayer, B Endothelial dysfunction in adipose triglyceride lipase deficiency.
Biochim Biophys Acta. 2014; 1841(6):906-917 Doi: 10.1016/j.bbalip.2014.03.005 [OPEN ACCESS]
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** Szkandera, J; Stotz, M; Absenger, G; Stojakovic, T; Samonigg, H; Kornprat, P; Schaberl-Moser, R; Alzoughbi, W; Lackner, C; Ress, AL; Seggewies, FS; Gerger, A; Hoefler, G; Pichler, M Validation of C-reactive protein levels as a prognostic indicator for survival in a large cohort of pancreatic cancer patients.
Br J Cancer. 2014; 110(1):183-188 Doi: 10.1038/bjc.2013.701 [OPEN ACCESS]
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Review

** Al-Zoughbi, W; Al-Zhoughbi, W; Huang, J; Paramasivan, GS; Till, H; Pichler, M; Guertl-Lackner, B; Hoefler, G Tumor macroenvironment and metabolism.
Semin Oncol. 2014; 41(2):281-295 Doi: 10.1053/j.seminoncol.2014.02.005 [OPEN ACCESS]
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Correction

** Al-Zoughbi, W; Huang, J; Paramasivan, GS; Till, H; Pichler, M; Guertl-Lackner, B; Hoefler, G Corrigendum to "Tumor Macroenvironment and Metabolism" [Seminars in Oncology, Vol 41, No 2, April 2014, pp 281-295].
Semin Oncol. 2014; 41(4):e31 Doi: 10.1053/j.seminoncol.2014.07.005 [OPEN ACCESS]
PubMed FullText FullText_MUG

2013

Full paper/article (Journal)

** Huang, J; Das, SK; Jha, P; Al Zoughbi, W; Schauer, S; Claudel, T; Sexl, V; Vesely, P; Birner-Gruenberger, R; Kratky, D; Trauner, M; Hoefler, G The PPARα agonist fenofibrate suppresses B-cell lymphoma in mice by modulating lipid metabolism.
Biochim Biophys Acta. 2013; 1831(10):1555-1565 Doi: 10.1016/j.bbalip.2013.04.012 [OPEN ACCESS]
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** Stotz, M; Gerger, A; Eisner, F; Szkandera, J; Loibner, H; Ress, AL; Kornprat, P; AlZoughbi, W; Zoughbi, WA; Seggewies, FS; Lackner, C; Stojakovic, T; Samonigg, H; Hoefler, G; Pichler, M Increased neutrophil-lymphocyte ratio is a poor prognostic factor in patients with primary operable and inoperable pancreatic cancer.
Br J Cancer. 2013; 109(2):416-421 Doi: 10.1038/bjc.2013.332 [OPEN ACCESS]
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** Szkandera, J; Stotz, M; Eisner, F; Absenger, G; Stojakovic, T; Samonigg, H; Kornprat, P; Schaberl-Moser, R; Alzoughbi, W; Ress, AL; Seggewies, FS; Gerger, A; Hoefler, G; Pichler, M External validation of the derived neutrophil to lymphocyte ratio as a prognostic marker on a large cohort of pancreatic cancer patients.
PLoS One. 2013; 8(11):e78225-e78225 Doi: 10.1371/journal.pone.0078225 [OPEN ACCESS]
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Correction

** Stotz, M; Gerger, A; Eisner, F; Szkandera, J; Loibner, H; Ress, AL; Kornprat, P; Alzoughbi, W; Seggewies, FS; Lackner, C; Stojakovic, T; Samonigg, H; Hoefler, G; Pichler, M Increased neutrophil-lymphocyte ratio is a poor prognostic factor in patients with primary operable as well as inoperable pancreatic cancer.
Br J Cancer. 2013; 109(7): 2026-2026. Doi: 10.1038/bjc.2013.591 [OPEN ACCESS]
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2012

Full paper/article (Journal)

** Senanayake, U; Das, S; Vesely, P; Alzoughbi, W; Fröhlich, LF; Chowdhury, P; Leuschner, I; Hoefler, G; Guertl, B miR-192, miR-194, miR-215, miR-200c and miR-141 are downregulated and their common target ACVR2B is strongly expressed in renal childhood neoplasms.
Carcinogenesis. 2012; 33(5):1014-1021 Doi: 10.1093/carcin/bgs126 [OPEN ACCESS]
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** Tamilarasan, KP; Temmel, H; Das, SK; Al Zoughbi, W; Schauer, S; Vesely, PW; Hoefler, G Skeletal muscle damage and impaired regeneration due to LPL-mediated lipotoxicity.
Cell Death Dis. 2012; 3(11):e354-e354 Doi: 10.1038/cddis.2012.91 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

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