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Kreuzthaler Markus Eduard |

** = Publications listed in SCI/SSCI/Pubmed

2025

Full paper/article (Journal)

** Abdulnazar, A; Schulz, S; Kreuzthaler, M Smoking Status Normalization with Cross-Encoders and SNOMED CT.
Stud Health Technol Inform. 2025; 327:818-822 Doi: 10.3233/SHTI250473
PubMed FullText FullText_MUG

 

** Kugic, A; Schulz, S; Kreuzthaler, M Domain Shift in Part-of-Speech Tagging.
Stud Health Technol Inform. 2025; 327: 896-897. Doi: 10.3233/SHTI250497
PubMed FullText FullText_MUG

 

2024

Full paper/article (Journal)

** Abdulnazar, A; Kreuzthaler, M; Schulz, S; Prietl, B; Herbsthofer, L Tumor Board Visualization: Integrating Clinical and Laboratory Insights.
Stud Health Technol Inform. 2024; 316: 1750-1751. Doi: 10.3233/SHTI240767
PubMed FullText FullText_MUG

 

** Abdulnazar, A; Kugic, A; Schulz, S; Stadlbauer, V; Kreuzthaler, M O2 supplementation disambiguation in clinical narratives to support retrospective COVID-19 studies.
BMC Med Inform Decis Mak. 2024; 24(1): 29 Doi: 10.1186/s12911-024-02425-2 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Abdulnazar, A; Roller, R; Schulz, S; Kreuzthaler, M Unsupervised SapBERT-based bi-encoders for medical concept annotation of clinical narratives with SNOMED CT
DIGIT HEALTH. 2024; 10: 20552076241288681 Doi: 10.1177/20552076241288681 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Abdulnazar, A; Roller, R; Schulz, S; Kreuzthaler, M Large Language Models for Clinical Text Cleansing Enhance Medical Concept Normalization
IEEE ACCESS. 2024; 12: 147981-147990. Doi: 10.1109/ACCESS.2024.3472500
Web of Science FullText FullText_MUG

 

** Aghaei, S; Celebi, R; Kreuzthaler, M; Schulz, S From Clinical Information Systems to Personalized Health Knowledge Graphs.
Stud Health Technol Inform. 2024; 316: 1463-1464. Doi: 10.3233/SHTI240689
PubMed FullText FullText_MUG

 

** Birner, A; Mairinger, M; Elst, C; Maget, A; Fellendorf, FT; Platzer, M; Queissner, R; Lenger, M; Tmava-Berisha, A; Bengesser, SA; Reininghaus, EZ; Kreuzthaler, M; Dalkner, N Machine-based learning of multidimensional data in bipolar disorder - pilot results.
Bipolar Disord. 2024; 26(4):364-375 Doi: 10.1111/bdi.13426
Web of Science PubMed FullText FullText_MUG

 

** Denecke, K; May, R; Rivera, Romero, O, , LLMHealthGroup Potential of Large Language Models in Health Care: Delphi Study.
J Med Internet Res. 2024; 26: e52399 Doi: 10.2196/52399 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Kugic, A; Schulz, S; Kreuzthaler, M Term Candidate Generation to Enrich Clinical Terminologies with Large Language Models.
Stud Health Technol Inform. 2024; 316: 695-699. Doi: 10.3233/SHTI240509
PubMed FullText FullText_MUG

 

** Kugic, A; Schulz, S; Kreuzthaler, M Disambiguation of acronyms in clinical narratives with large language models.
J Am Med Inform Assoc. 2024; 31(9):2040-2046 Doi: 10.1093/jamia/ocae157 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Pfeifer, B; Sirocchi, C; Bloice, MD; Kreuzthaler, M; Urschler, M Federated unsupervised random forest for privacy-preserving patient stratification.
Bioinformatics. 2024; 40(Supplement_2): ii198-ii207. Doi: 10.1093/bioinformatics/btae382 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Veeranki, SPK; Abdulnazar, A; Kramer, D; Kreuzthaler, M; Lumenta, DB Multi-label text classification via secondary use of large clinical real-world data sets.
Sci Rep. 2024; 14(1): 26972 Doi: 10.1038/s41598-024-76424-8 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

Review

** Kugic, A; Martin, I; Modersohn, L; Pallaoro, P; Kreuzthaler, M; Schulz, S; Boeker, M Processing of Short-Form Content in Clinical Narratives: Systematic Scoping Review.
J Med Internet Res. 2024; 26:e57852 Doi: 10.2196/57852 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

Full paper/article (Proceedings)

** Kreuzthaler, M; Pfeifer, B; Schulz, S Secondary Use of Clinical Problem List Descriptions for Bi-Encoder Based ICD-10 Classification.
AMIA Annu Symp Proc. 2024; 2024:620-627 [OPEN ACCESS]
PubMed PUBMED Central

 

2023

Full paper/article (Journal)

** Abdulnazar, A; Kreuzthaler, M; Roller, R; Schulz, S SapBERT-Based Medical Concept Normalization Using SNOMED CT.
Stud Health Technol Inform. 2023; 302: 825-826. Doi: 10.3233/SHTI230278
PubMed FullText FullText_MUG

 

** Kreuzthaler, M; Brochhausen, M; Zayas, C; Blobel, B; Schulz, S Linguistic and ontological challenges of multiple domains contributing to transformed health ecosystems.
Front Med (Lausanne). 2023; 10: 1073313 Doi: 10.3389/fmed.2023.1073313 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Kreuzthaler, M; Pfeifer, B; Kramer, D; Schulz, S Secondary Use of Clinical Problem List Entries for Neural Network-Based Disease Code Assignment.
Stud Health Technol Inform. 2023; 302: 788-792. Doi: 10.3233/SHTI230267
PubMed FullText FullText_MUG

 

** Kugic, A; Kreuzthaler, M; Schulz, S Clinical Acronym Disambiguation via ChatGPT and BING.
Stud Health Technol Inform. 2023; 309:78-82 Doi: 10.3233/SHTI230743
PubMed FullText FullText_MUG

 

** Kugic, A; Pfeifer, B; Schulz, S; Kreuzthaler, M Data-Driven Identification of Clinical Real-World Expressions Linked to ICD.
Stud Health Technol Inform. 2023; 302: 827-828. Doi: 10.3233/SHTI230279
PubMed FullText FullText_MUG

 

** Kugic, A; Pfeifer, B; Schulz, S; Kreuzthaler, M Embedding-based terminology expansion via secondary use of large clinical real-world datasets.
J Biomed Inform. 2023; 147:104497 Doi: 10.1016/j.jbi.2023.104497
Web of Science PubMed FullText FullText_MUG

 

** Schulz, S; Abdulnazar, A; Kreuzthaler, M Clustering Similar Diagnosis Terms.
Stud Health Technol Inform. 2023; 302: 837-838. Doi: 10.3233/SHTI230284
PubMed FullText FullText_MUG

 

2022

Full paper/article (Journal)

** Khaled, M; Sareban, M; Kreuzthaler, M; Schulz, S; Hussein, R Overview of Existing Tools for Extracting Health and Fitness Data from mHealth Apps.
Stud Health Technol Inform. 2022; 295: 49-50. Doi: 10.3233/SHTI220657
PubMed FullText FullText_MUG

 

2020

Full paper/article (Journal)

** Kreuzthaler, M; Oleynik, M; Schulz, S Character-Level Neural Language Modelling in the Clinical Domain.
Stud Health Technol Inform. 2020; 270:83-87 Doi: 10.3233/SHTI200127
PubMed FullText FullText_MUG

 

2019

Full paper/article (Journal)

** Kreuzthaler, M; Pfeifer, B; Vera Ramos, JA; Kramer, D; Grogger, V; Bredenfeldt, S; Pedevilla, M; Krisper, P; Schulz, S EHR problem list clustering for improved topic-space navigation.
BMC Med Inform Decis Mak. 2019; 19(Suppl 3):72-72 Doi: 10.1186/s12911-019-0789-9 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Oleynik, M; Kugic, A; Kasáč, Z; Kreuzthaler, M Evaluating shallow and deep learning strategies for the 2018 n2c2 shared task on clinical text classification.
J Am Med Inform Assoc. 2019; 26(11):1247-1254 Doi: 10.1093/jamia/ocz149 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Pomares-Quimbaya, A; Kreuzthaler, M; Schulz, S Current approaches to identify sections within clinical narratives from electronic health records: a systematic review.
BMC Med Res Methodol. 2019; 19(1):155-155 Doi: 10.1186/s12874-019-0792-y [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Vera Ramos, JA; Kreuzthaler, M; Schulz, S Supervised ICD Code Assignment to Short Clinical Problem List Entries.
Stud Health Technol Inform. 2019; 258(Suppl 3):184-188
PubMed

 

2018

Full paper/article (Journal)

** Kreuzthaler, M; Pfeifer, B; Vera Ramos, JA; Kramer, D; Grogger, V; Bredenfeldt, S; Pedevilla, M; Krisper, P; Schulz, S EHR Text Categorization for Enhanced Patient-Based Document Navigation.
Stud Health Technol Inform. 2018; 248: 100-107.
PubMed

 

2017

Full paper/article (Journal)

** Kreuzthaler, M; Martínez-Costa, C; Kaiser, P; Schulz, S Semantic Technologies for Re-Use of Clinical Routine Data.
Stud Health Technol Inform. 2017; 236(18):24-31
PubMed

 

** Oleynik, M; Kreuzthaler, M; Schulz, S Unsupervised Abbreviation Expansion in Clinical Narratives.
Stud Health Technol Inform. 2017; 245(11):539-543
PubMed

 

2016

Full paper/article (Journal)

** Kreuzthaler, M; Miñarro-Giménez, JA; Schulz, S MapReduce in the Cloud: A Use Case Study for Efficient Co-Occurrence Processing of MEDLINE Annotations with MeSH.
Stud Health Technol Inform. 2016; 228(12):582-586
PubMed

 

** López-García, P; Kreuzthaler, M; Schulz, S; Scherr, D; Daumke, P; Markó, K; Kors, JA; van Mulligen, EM; Wang, X; Gonna, H; Behr, E; Honrado, Á SEMCARE: Multilingual Semantic Search in Semi-Structured Clinical Data.
Stud Health Technol Inform. 2016; 223(3):93-99 [OPEN ACCESS]
PubMed

 

2015

Full paper/article (Journal)

** Kreuzthaler, M; Daumke, P; Schulz, S Semantic retrieval and navigation in clinical document collections.
Stud Health Technol Inform. 2015; 212(3):9-14
PubMed

 

** Kreuzthaler, M; Schulz, S Detection of sentence boundaries and abbreviations in clinical narratives.
BMC Med Inform Decis Mak. 2015; 15 Suppl 2(1):S4-S4 Doi: 10.1186/1472-6947-15-S2-S4 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Kreuzthaler, M; Schulz, S; Berghold, A Secondary use of electronic health records for building cohort studies through top-down information extraction.
J Biomed Inform. 2015; 53: 188-195. Doi: 10.1016/j.jbi.2014.10.010 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** Miñarro-Giménez, JA; Kreuzthaler, M; Bernhardt-Melischnig, J; Martínez-Costa, C; Schulz, S Acquiring Plausible Predications from MEDLINE by Clustering MeSH Annotations.
Stud Health Technol Inform. 2015; 216(12):716-720
PubMed

 

** Miñarro-Giménez, JA; Kreuzthaler, M; Schulz, S Knowledge Extraction from MEDLINE by Combining Clustering with Natural Language Processing.
AMIA Annu Symp Proc. 2015; 2015(12): 915-924. [OPEN ACCESS]
PubMed PUBMED Central

 

2013

Full paper/article (Journal)

** Schulz, S; Bernhardt-Melischnig, J; Kreuzthaler, M; Daumke, P; Boeker, M Machine vs. human translation of SNOMED CT terms.
Stud Health Technol Inform. 2013; 192:581-584
PubMed FullText

 

2012

Full paper/article (Journal)

** Andrade, AQ; Kreuzthaler, M; Hastings, J; Krestyaninova, M; Schulz, S Requirements for semantic biobanks.
Stud Health Technol Inform. 2012; 180(12):569-573
PubMed

 

** Kreuzthaler, M; Schulz, S Metonymies in medical terminologies. A SNOMED CT case study.
AMIA Annu Symp Proc. 2012; 2012(6):463-467 [OPEN ACCESS]
PubMed PUBMED Central FullText

 

2011

Full paper/article (Journal)

** Kreuzthaler, M; Bloice, MD; Faulstich, L; Simonic, KM; Holzinger, A A Comparison of Different Retrieval Strategies Working on Medical Free Texts
J UNIVERS COMPUT SCI. 2011; 17(7): 1109-1133. [OPEN ACCESS]
Web of Science

 

** Kreuzthaler, M; Schulz, S Truecasing clinical narratives.
Stud Health Technol Inform. 2011; 169: 589-593.
PubMed

 

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